Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNA5SP271-201ENST00000516700 88 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 CYCSP22-201ENST00000517555 339 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA3P55318 AC060775.1-201ENST00000518241 520 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 NPM1P6-201ENST00000521088 871 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA3P55318 AC012339.2-201ENST00000523996 453 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA3P55318 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC3.65□□□□□ -1.83
FOXA3P55318 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA3P55318 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA3P55318 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA3P55318 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC3.65□□□□□ -1.83
FOXA3P55318 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA3P55318 AP005119.2-201ENST00000579735 1105 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA3P55318 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXA3P55318 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA3P55318 SNX18P1Y-201ENST00000616231 511 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AC009237.17-201ENST00000618111 748 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AC015804.1-201ENST00000622935 435 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AP002967.1-201ENST00000624203 539 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 AC055839.1-201ENST00000634467 498 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
FOXA3P55318 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA3P55318 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA3P55318 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA3P55318 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA3P55318 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
FOXA3P55318 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXA3P55318 AP001002.1-201ENST00000625148 1513 ntBASIC3.65□□□□□ -1.83
FOXA3P55318 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 HCFC2P1-201ENST00000392864 1592 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.64□□□□□ -1.83
FOXA3P55318 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 OR10J6P-201ENST00000289731 930 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
FOXA3P55318 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 RNA5SP335-201ENST00000363817 110 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AL353625.1-202ENST00000366273 571 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AC019155.1-201ENST00000382242 574 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 SNORA77-201ENST00000408716 125 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 MORN2-202ENST00000409077 465 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 EIF4A1P3-201ENST00000411521 244 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC3.64□□□□□ -1.83
FOXA3P55318 AC069154.1-201ENST00000432914 542 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC3.64□□□□□ -1.83
FOXA3P55318 SUMO2P3-201ENST00000438311 288 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AL390119.1-201ENST00000440329 312 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 RANP1-206ENST00000455094 651 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AC104849.1-201ENST00000462623 405 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 RPL5P30-201ENST00000465511 891 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AL133445.1-201ENST00000467051 452 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 RN7SL51P-201ENST00000468230 285 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AC108022.1-201ENST00000493466 478 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 RN7SL612P-201ENST00000497704 295 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AC112184.1-201ENST00000505179 312 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 RPS4XP20-201ENST00000505751 772 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AC138866.2-201ENST00000508650 584 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXA3P55318 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXA3P55318 TRIM77BP-201ENST00000524985 1119 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXA3P55318 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXA3P55318 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 AC079600.1-201ENST00000550326 297 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXA3P55318 AC026826.3-201ENST00000561747 158 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 CD24P2-201ENST00000565486 219 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AC007066.2-202ENST00000566531 914 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 HOTTIP_3.1-201ENST00000619957 337 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 MIR8080-201ENST00000622224 89 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 AC235565.1-201ENST00000456962 1325 ntBASIC3.64□□□□□ -1.83
FOXA3P55318 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC3.64□□□□□ -1.83
FOXA3P55318 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA3P55318 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC3.63□□□□□ -1.83
FOXA3P55318 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms