Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RN7SKP286-201ENST00000410894 299 ntBASIC5.89□□□□□ -1.47
NEK3P51956 RN7SKP29-201ENST00000410957 272 ntBASIC5.89□□□□□ -1.47
NEK3P51956 MRPL53P1-201ENST00000414323 319 ntBASIC5.89□□□□□ -1.47
NEK3P51956 SDHDP6-201ENST00000414693 480 ntBASIC5.89□□□□□ -1.47
NEK3P51956 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC5.89□□□□□ -1.47
NEK3P51956 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.89□□□□□ -1.47
NEK3P51956 RPS12P17-201ENST00000438591 377 ntBASIC5.89□□□□□ -1.47
NEK3P51956 AC023141.8-201ENST00000442554 208 ntBASIC5.89□□□□□ -1.47
NEK3P51956 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC5.89□□□□□ -1.47
NEK3P51956 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.89□□□□□ -1.47
NEK3P51956 RPL36AP39-201ENST00000445859 318 ntBASIC5.89□□□□□ -1.47
NEK3P51956 TPMTP4-201ENST00000450749 678 ntBASIC5.89□□□□□ -1.47
NEK3P51956 RN7SL174P-201ENST00000475578 289 ntBASIC5.89□□□□□ -1.47
NEK3P51956 RN7SL273P-201ENST00000481561 299 ntBASIC5.89□□□□□ -1.47
NEK3P51956 RN7SL101P-201ENST00000496350 279 ntBASIC5.89□□□□□ -1.47
NEK3P51956 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.89□□□□□ -1.47
NEK3P51956 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC5.89□□□□□ -1.47
NEK3P51956 CYCSP22-201ENST00000517555 339 ntBASIC5.89□□□□□ -1.47
NEK3P51956 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.89□□□□□ -1.47
NEK3P51956 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.89□□□□□ -1.47
NEK3P51956 MIR4260-201ENST00000583107 67 ntBASIC5.89□□□□□ -1.47
NEK3P51956 AC015802.2-201ENST00000589690 189 ntBASIC5.89□□□□□ -1.47
NEK3P51956 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
NEK3P51956 AC017076.1-201ENST00000607613 578 ntBASIC5.89□□□□□ -1.47
NEK3P51956 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.89□□□□□ -1.47
NEK3P51956 AP002967.1-201ENST00000624203 539 ntBASIC5.89□□□□□ -1.47
NEK3P51956 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.89□□□□□ -1.47
NEK3P51956 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.89□□□□□ -1.47
NEK3P51956 OR11H2-202ENST00000641517 1085 ntBASIC5.89□□□□□ -1.47
NEK3P51956 MIR193BHG-214ENST00000641765 509 ntBASIC5.89□□□□□ -1.47
NEK3P51956 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NEK3P51956 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
NEK3P51956 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NEK3P51956 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.89□□□□□ -1.47
NEK3P51956 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NEK3P51956 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
NEK3P51956 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NEK3P51956 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NEK3P51956 AC107027.3-201ENST00000565095 3473 ntBASIC5.89□□□□□ -1.47
NEK3P51956 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
NEK3P51956 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.88□□□□□ -1.47
NEK3P51956 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
NEK3P51956 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
NEK3P51956 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
NEK3P51956 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
NEK3P51956 MIR323A-201ENST00000362199 86 ntBASIC5.88□□□□□ -1.47
NEK3P51956 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
NEK3P51956 RNA5SP91-201ENST00000390902 119 ntBASIC5.88□□□□□ -1.47
NEK3P51956 SNORD65C-201ENST00000390962 71 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AL512422.1-201ENST00000407033 553 ntBASIC5.88□□□□□ -1.47
NEK3P51956 RN7SKP206-201ENST00000410823 293 ntBASIC5.88□□□□□ -1.47
NEK3P51956 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.88□□□□□ -1.47
NEK3P51956 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.88□□□□□ -1.47
NEK3P51956 RPL34P3-201ENST00000421454 338 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.88□□□□□ -1.47
NEK3P51956 AC127526.2-201ENST00000426436 775 ntBASIC5.88□□□□□ -1.47
NEK3P51956 RPS27AP6-201ENST00000427962 448 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.88□□□□□ -1.47
NEK3P51956 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.88□□□□□ -1.47
NEK3P51956 AC064862.4-201ENST00000442180 334 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AL592437.1-201ENST00000443781 492 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AL050341.1-201ENST00000447743 313 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.88□□□□□ -1.47
NEK3P51956 OR51B8P-201ENST00000449892 769 ntBASIC5.88□□□□□ -1.47
NEK3P51956 TPT1P1-201ENST00000458495 518 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.88□□□□□ -1.47
NEK3P51956 AC092905.1-201ENST00000467527 949 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AC006539.1-201ENST00000481419 501 ntBASIC5.88□□□□□ -1.47
NEK3P51956 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC5.88□□□□□ -1.47
NEK3P51956 OR7E157P-201ENST00000494376 911 ntBASIC5.88□□□□□ -1.47
NEK3P51956 HPRT1P2-201ENST00000505250 544 ntBASIC5.88□□□□□ -1.47
NEK3P51956 SUMO2P5-201ENST00000506790 245 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.88□□□□□ -1.47
NEK3P51956 AC106872.4-201ENST00000510050 523 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AC147055.3-201ENST00000510547 851 ntBASIC5.88□□□□□ -1.47
NEK3P51956 SNORA70.11-201ENST00000515987 138 ntBASIC5.88□□□□□ -1.47
NEK3P51956 SNORA70.13-201ENST00000516116 138 ntBASIC5.88□□□□□ -1.47
NEK3P51956 MIR2117-201ENST00000516780 80 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.88□□□□□ -1.47
NEK3P51956 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.88□□□□□ -1.47
NEK3P51956 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.88□□□□□ -1.47
NEK3P51956 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.88□□□□□ -1.47
NEK3P51956 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.88□□□□□ -1.47
NEK3P51956 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.88□□□□□ -1.47
NEK3P51956 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.88□□□□□ -1.47
NEK3P51956 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.88□□□□□ -1.47
NEK3P51956 RN7SL753P-201ENST00000581238 290 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.88□□□□□ -1.47
NEK3P51956 AC090912.3-201ENST00000609775 533 ntBASIC5.88□□□□□ -1.47
NEK3P51956 Z95327.3-201ENST00000610385 572 ntBASIC5.88□□□□□ -1.47
NEK3P51956 AC243654.2-201ENST00000612843 443 ntBASIC5.88□□□□□ -1.47
NEK3P51956 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.88□□□□□ -1.47
NEK3P51956 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC5.88□□□□□ -1.47
NEK3P51956 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
NEK3P51956 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
NEK3P51956 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.88□□□□□ -1.47
NEK3P51956 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
NEK3P51956 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
NEK3P51956 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
NEK3P51956 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms