Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXC4P09017 RPL7AP61-201ENST00000443410 636 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXC4P09017 OR2A3P-201ENST00000493774 953 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXC4P09017 ENPP7P11-201ENST00000505915 627 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXC4P09017 AL671862.1-201ENST00000515851 349 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXC4P09017 OR8A2P-201ENST00000528631 952 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXC4P09017 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXC4P09017 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXC4P09017 AC116553.2-201ENST00000564203 463 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 UBE2FP2-201ENST00000566646 462 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 PRPF19P1-201ENST00000584766 898 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 AL031320.1-201ENST00000604177 357 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 AC087821.1-201ENST00000623639 567 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXC4P09017 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXC4P09017 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXC4P09017 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXC4P09017 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXC4P09017 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
HOXC4P09017 TRIM51GP-201ENST00000534741 1350 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXC4P09017 AC132825.1-201ENST00000463573 2247 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXC4P09017 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXC4P09017 AC012618.3-205ENST00000637896 1496 ntBASIC4.88□□□□□ -1.63
HOXC4P09017 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXC4P09017 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
HOXC4P09017 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 AC083843.2-201ENST00000568248 6253 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC4P09017 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HOXC4P09017 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 RN7SKP97-201ENST00000410966 333 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 AC114755.2-201ENST00000413520 361 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC4P09017 FABP7P2-201ENST00000429946 379 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC4P09017 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC4P09017 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC4P09017 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXC4P09017 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC4P09017 AURKAPS2-201ENST00000454983 333 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 AL356390.1-201ENST00000455684 397 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 RPL23AP56-201ENST00000460778 453 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 RN7SL517P-201ENST00000462240 305 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXC4P09017 AC073073.1-201ENST00000493920 463 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 Y_RNA.719-201ENST00000517156 106 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 AC100784.1-201ENST00000522790 310 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 OR10D4P-201ENST00000525892 951 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC4P09017 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXC4P09017 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 AC091042.1-201ENST00000579213 173 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 MIR3667-201ENST00000581025 74 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXC4P09017 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC4P09017 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC4P09017 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXC4P09017 AC243960.7-201ENST00000623532 707 ntBASIC4.87□□□□□ -1.63
HOXC4P09017 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
HOXC4P09017 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.87□□□□□ -1.63
HOXC4P09017 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXC4P09017 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXC4P09017 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXC4P09017 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
HOXC4P09017 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXC4P09017 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
HOXC4P09017 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXC4P09017 RNVU1-6-201ENST00000364688 164 ntBASIC4.86□□□□□ -1.63
HOXC4P09017 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXC4P09017 GAPDHP15-201ENST00000398586 975 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms