Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RNA5SP435-201ENST00000364044 108 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 MTND3P20-201ENST00000407663 186 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.21□□□□□ -1.58
HNF4AP41235 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HNF4AP41235 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.21□□□□□ -1.58
HNF4AP41235 MTND6P18-201ENST00000439477 513 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.21□□□□□ -1.58
HNF4AP41235 TCEA1P3-201ENST00000443005 880 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.21□□□□□ -1.58
HNF4AP41235 AC105399.1-202ENST00000447303 205 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AC017099.1-201ENST00000448261 1028 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.21□□□□□ -1.58
HNF4AP41235 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC5.21□□□□□ -1.58
HNF4AP41235 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HNF4AP41235 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.21□□□□□ -1.58
HNF4AP41235 AC100832.1-201ENST00000471945 383 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
HNF4AP41235 AC022133.1-201ENST00000490961 571 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AC108157.1-201ENST00000510511 539 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AC098976.1-201ENST00000513014 541 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.21□□□□□ -1.58
HNF4AP41235 RNA5SP362-201ENST00000516048 118 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.21□□□□□ -1.58
HNF4AP41235 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.21□□□□□ -1.58
HNF4AP41235 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.21□□□□□ -1.58
HNF4AP41235 AC018552.3-201ENST00000567416 561 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AC005341.1-201ENST00000571086 708 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.21□□□□□ -1.58
HNF4AP41235 AC012146.2-201ENST00000576545 416 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 RN7SL290P-201ENST00000578661 300 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AC022884.3-201ENST00000579571 248 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.21□□□□□ -1.58
HNF4AP41235 AC010245.2-201ENST00000606908 1167 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AL391834.1-201ENST00000609609 560 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.21□□□□□ -1.58
HNF4AP41235 LINC00216-201ENST00000623548 1126 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AP003400.3-201ENST00000624904 346 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 AL049767.1-202ENST00000637826 242 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.21□□□□□ -1.58
HNF4AP41235 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HNF4AP41235 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.21□□□□□ -1.58
HNF4AP41235 OR51C1P-202ENST00000641159 1444 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.21□□□□□ -1.58
HNF4AP41235 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.21□□□□□ -1.58
HNF4AP41235 AC104118.1-201ENST00000607625 1589 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.2□□□□□ -1.58
HNF4AP41235 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HNF4AP41235 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.2□□□□□ -1.58
HNF4AP41235 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HNF4AP41235 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HNF4AP41235 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HNF4AP41235 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HNF4AP41235 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HNF4AP41235 RNA5SP234-201ENST00000363916 119 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.2□□□□□ -1.58
HNF4AP41235 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HNF4AP41235 RNU1-77P-201ENST00000390868 162 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HNF4AP41235 HYALP1-201ENST00000417674 1279 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.2□□□□□ -1.58
HNF4AP41235 SRSF1P1-201ENST00000424058 520 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 HSPD1P12-201ENST00000429127 1069 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.2□□□□□ -1.58
HNF4AP41235 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.2□□□□□ -1.58
HNF4AP41235 RPL19P16-201ENST00000433839 588 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 GSTM5P1-201ENST00000434751 660 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.2□□□□□ -1.58
HNF4AP41235 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HNF4AP41235 AC090804.1-201ENST00000448870 490 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 AC016724.1-201ENST00000453215 421 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 RPS12P31-201ENST00000491419 398 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 AC069304.1-201ENST00000491593 704 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.2□□□□□ -1.58
HNF4AP41235 HIGD1AP18-201ENST00000520730 278 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.2□□□□□ -1.58
HNF4AP41235 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.2□□□□□ -1.58
HNF4AP41235 LSM3P2-201ENST00000551246 273 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 SETP1-201ENST00000556014 845 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 AC067805.1-201ENST00000559344 470 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.2□□□□□ -1.58
HNF4AP41235 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.2□□□□□ -1.58
HNF4AP41235 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.2□□□□□ -1.58
HNF4AP41235 AC009027.1-201ENST00000604510 479 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 AC010200.2-201ENST00000605098 235 ntBASIC5.2□□□□□ -1.58
HNF4AP41235 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.2□□□□□ -1.58
HNF4AP41235 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HNF4AP41235 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HNF4AP41235 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
HNF4AP41235 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC5.2□□□□□ -1.58
HNF4AP41235 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HNF4AP41235 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
HNF4AP41235 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.2□□□□□ -1.58
HNF4AP41235 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.2□□□□□ -1.58
HNF4AP41235 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HNF4AP41235 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.19□□□□□ -1.58
HNF4AP41235 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.19□□□□□ -1.58
HNF4AP41235 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
HNF4AP41235 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HNF4AP41235 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms