Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SCN4AP35499 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SCN4AP35499 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SCN4AP35499 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SCN4AP35499 ATP5HP3-201ENST00000396994 486 ntBASIC5.85□□□□□ -1.47
SCN4AP35499 RPL36AP36-201ENST00000418616 301 ntBASIC5.85□□□□□ -1.47
SCN4AP35499 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SCN4AP35499 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.85□□□□□ -1.47
SCN4AP35499 RPL23AP24-201ENST00000458203 385 ntBASIC5.85□□□□□ -1.47
SCN4AP35499 NPM1P28-201ENST00000492269 840 ntBASIC5.85□□□□□ -1.47
SCN4AP35499 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.85□□□□□ -1.47
SCN4AP35499 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.85□□□□□ -1.47
SCN4AP35499 MRPL49P2-201ENST00000521066 465 ntBASIC5.85□□□□□ -1.47
SCN4AP35499 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SCN4AP35499 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.85□□□□□ -1.47
SCN4AP35499 AL139124.1-201ENST00000609123 421 ntBASIC5.85□□□□□ -1.47
SCN4AP35499 FAM27B-201ENST00000610601 213 ntBASIC5.85□□□□□ -1.47
SCN4AP35499 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
SCN4AP35499 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SCN4AP35499 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.84□□□□□ -1.47
SCN4AP35499 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
SCN4AP35499 SNORA70.4-201ENST00000365509 134 ntBASIC5.84□□□□□ -1.47
SCN4AP35499 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.84□□□□□ -1.47
SCN4AP35499 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.84□□□□□ -1.47
SCN4AP35499 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.84□□□□□ -1.47
SCN4AP35499 HMGB1P4-201ENST00000455362 567 ntBASIC5.84□□□□□ -1.47
SCN4AP35499 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.84□□□□□ -1.47
SCN4AP35499 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.84□□□□□ -1.47
SCN4AP35499 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.84□□□□□ -1.47
SCN4AP35499 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC5.84□□□□□ -1.47
SCN4AP35499 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.84□□□□□ -1.47
SCN4AP35499 RN7SL802P-201ENST00000577858 299 ntBASIC5.84□□□□□ -1.47
SCN4AP35499 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.84□□□□□ -1.47
SCN4AP35499 AL591034.3-201ENST00000605511 685 ntBASIC5.84□□□□□ -1.47
SCN4AP35499 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SCN4AP35499 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SCN4AP35499 AC092376.2-201ENST00000622621 4116 ntBASIC5.84□□□□□ -1.47
SCN4AP35499 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SCN4AP35499 CR1-204ENST00000367052 7469 ntTSL 5 BASIC5.84□□□□□ -1.47
SCN4AP35499 CR1-205ENST00000367053 7469 ntTSL 5 BASIC5.84□□□□□ -1.47
SCN4AP35499 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SCN4AP35499 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SCN4AP35499 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
SCN4AP35499 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SCN4AP35499 AC104964.3-201ENST00000606115 2860 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SCN4AP35499 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.83□□□□□ -1.48
SCN4AP35499 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
SCN4AP35499 VTI1BP4-201ENST00000427516 527 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 FHP1-201ENST00000442741 703 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 FPGT-203ENST00000467578 601 ntTSL 2 BASIC5.83□□□□□ -1.48
SCN4AP35499 RPL7P19-201ENST00000469948 618 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SCN4AP35499 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.83□□□□□ -1.48
SCN4AP35499 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.83□□□□□ -1.48
SCN4AP35499 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SCN4AP35499 AC007016.1-201ENST00000512110 244 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.83□□□□□ -1.48
SCN4AP35499 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.83□□□□□ -1.48
SCN4AP35499 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.83□□□□□ -1.48
SCN4AP35499 AC027216.1-201ENST00000577726 685 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 MIR5699-201ENST00000578903 90 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.83□□□□□ -1.48
SCN4AP35499 AC010424.2-201ENST00000607594 443 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 AC007497.1-201ENST00000610421 561 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 AC006133.1-201ENST00000617106 264 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
SCN4AP35499 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SCN4AP35499 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.83□□□□□ -1.48
SCN4AP35499 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SCN4AP35499 AC083837.1-201ENST00000565297 2994 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
SCN4AP35499 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
SCN4AP35499 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
SCN4AP35499 SNORA70C-201ENST00000384538 135 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 MIR589-201ENST00000385238 99 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.83□□□□□ -1.48
SCN4AP35499 BX842559.2-201ENST00000451418 605 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.83□□□□□ -1.48
SCN4AP35499 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.83□□□□□ -1.48
SCN4AP35499 NDUFB4P12-201ENST00000513465 390 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
SCN4AP35499 AL049839.1-201ENST00000556151 657 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.83□□□□□ -1.48
SCN4AP35499 AC069061.3-201ENST00000582254 823 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.83□□□□□ -1.48
SCN4AP35499 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.83□□□□□ -1.48
SCN4AP35499 AC002069.2-201ENST00000603580 883 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 AC100847.1-201ENST00000611316 481 ntBASIC5.83□□□□□ -1.48
SCN4AP35499 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SCN4AP35499 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.83□□□□□ -1.48
SCN4AP35499 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SCN4AP35499 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.82□□□□□ -1.48
SCN4AP35499 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SCN4AP35499 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SCN4AP35499 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SCN4AP35499 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SCN4AP35499 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.82□□□□□ -1.48
SCN4AP35499 NPM1P37-201ENST00000403105 874 ntBASIC5.82□□□□□ -1.48
SCN4AP35499 OR51B3P-201ENST00000412287 913 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms