Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.79□□□□□ -1.64
HOXD4P09016 TRIM60P13-201ENST00000432350 1283 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXD4P09016 HIGD1AP8-201ENST00000453927 274 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 TPRKBP1-201ENST00000456243 481 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXD4P09016 AC015864.1-201ENST00000496512 544 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
HOXD4P09016 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.79□□□□□ -1.64
HOXD4P09016 GTF2F2P1-201ENST00000511083 675 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 RNA5SP228-201ENST00000516232 133 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.79□□□□□ -1.64
HOXD4P09016 BMPR1APS2-201ENST00000527904 1012 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 AC130364.2-201ENST00000528639 604 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXD4P09016 OR11J2P-201ENST00000555298 907 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXD4P09016 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXD4P09016 AC009597.2-201ENST00000604659 592 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 AL451049.1-201ENST00000608672 497 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 AL133445.2-201ENST00000611191 527 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 AC003001.2-201ENST00000616294 831 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.79□□□□□ -1.64
HOXD4P09016 AC073592.7-201ENST00000623659 507 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXD4P09016 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXD4P09016 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXD4P09016 AC114947.2-201ENST00000565748 2125 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXD4P09016 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXD4P09016 AC104964.3-201ENST00000606115 2860 ntBASIC4.79□□□□□ -1.64
HOXD4P09016 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXD4P09016 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXD4P09016 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXD4P09016 AC022417.1-201ENST00000624768 1303 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HOXD4P09016 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
HOXD4P09016 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
HOXD4P09016 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
HOXD4P09016 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXD4P09016 CHMP1B2P-201ENST00000399581 597 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 NUDT19P3-201ENST00000404698 555 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXD4P09016 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXD4P09016 AL513343.1-201ENST00000451818 792 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 DNAJB5P1-201ENST00000454004 806 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 AC245028.2-201ENST00000458673 253 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXD4P09016 RN7SL423P-201ENST00000486202 304 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 AL049874.2-201ENST00000492636 288 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
HOXD4P09016 BTG4P1-201ENST00000510421 183 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXD4P09016 RFPL4AP3-201ENST00000515267 345 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXD4P09016 HNRNPRP2-201ENST00000528421 743 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXD4P09016 CR383656.6-201ENST00000550518 394 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXD4P09016 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXD4P09016 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXD4P09016 QTRT1P1-201ENST00000604344 1078 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXD4P09016 AC022106.2-201ENST00000620114 757 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 AL445528.2-201ENST00000620582 470 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXD4P09016 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXD4P09016 STX3-208ENST00000641815 3236 ntBASIC4.78□□□□□ -1.64
HOXD4P09016 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXD4P09016 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXD4P09016 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXD4P09016 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXD4P09016 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXD4P09016 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
HOXD4P09016 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
HOXD4P09016 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HOXD4P09016 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXD4P09016 SCARNA15-201ENST00000607520 4325 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXD4P09016 AL672167.1-204ENST00000641875 3017 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXD4P09016 SNORA16A-201ENST00000384342 137 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HOXD4P09016 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXD4P09016 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXD4P09016 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXD4P09016 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXD4P09016 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXD4P09016 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXD4P09016 RAD1P2-201ENST00000446414 663 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXD4P09016 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXD4P09016 BX284632.1-201ENST00000478218 541 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 RWDD4P1-201ENST00000488019 565 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXD4P09016 MYL12BP2-201ENST00000503948 512 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 150.5 ms