Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 RN7SKP227-201ENST00000364445 330 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 AC007618.1-201ENST00000366455 732 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 TDGF1P1-201ENST00000445734 527 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 SNORA84-201ENST00000459229 133 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 RN7SL244P-201ENST00000493405 297 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 PPM1AP1-201ENST00000502740 1135 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 PRPF19P1-201ENST00000584766 898 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 EIF1P5-201ENST00000585002 234 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 AL133338.2-201ENST00000604292 736 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 AC024941.1-201ENST00000612250 334 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 AC063976.2-201ENST00000425667 3556 ntBASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 IL6-206ENST00000407492 926 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 RPL5P12-201ENST00000477071 851 ntBASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 AC008782.1-201ENST00000603386 430 ntBASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 SNORA37-201ENST00000384504 129 ntBASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 AL050305.1-201ENST00000399993 1230 ntBASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 ATG4AP1-201ENST00000416893 538 ntBASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 CREM-230ENST00000474931 626 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 AL049839.1-201ENST00000556151 657 ntBASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 AL591034.3-201ENST00000605511 685 ntBASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 MIR6716-201ENST00000613413 80 ntBASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC88AQ3V6T2 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 AL591135.1-201ENST00000401578 5914 ntBASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 ECM1P2-201ENST00000503354 1577 ntBASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 RNU1-85P-201ENST00000364127 164 ntBASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 OR51B3P-201ENST00000412287 913 ntBASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 RPL12P43-201ENST00000420608 499 ntBASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 RPL12P28-201ENST00000430852 489 ntBASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 PRPF38AP1-201ENST00000451976 933 ntBASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 HMGB1P4-201ENST00000455362 567 ntBASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 AL356218.2-201ENST00000605264 187 ntBASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 MIR6853-201ENST00000619642 74 ntBASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.04□□□□□ -1.44
CCDC88AQ3V6T2 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC88AQ3V6T2 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms