Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC079097.1-201ENST00000512187 1399 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 AC092111.2-201ENST00000611627 1414 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP41Q3LFD5 OR9K1P-202ENST00000641111 3217 ntBASIC5.63□□□□□ -1.51
USP41Q3LFD5 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
USP41Q3LFD5 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 AL359715.3-201ENST00000569267 2123 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 SNURFL-201ENST00000309296 343 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 BUD31P2-201ENST00000449374 300 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 SSR3-208ENST00000496050 579 ntTSL 4 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 AC091912.1-201ENST00000511351 248 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 OR4R2P-201ENST00000530815 597 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 MIMT1-201ENST00000597105 1050 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 AL133247.2-201ENST00000603236 482 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 AL355802.4-201ENST00000607635 548 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 AL162574.1-201ENST00000615702 950 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 AP003499.2-201ENST00000624100 483 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 AP003400.3-201ENST00000624904 346 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 AC135068.12-201ENST00000637370 931 ntBASIC5.62□□□□□ -1.51
USP41Q3LFD5 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP41Q3LFD5 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.62□□□□□ -1.51
USP41Q3LFD5 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP41Q3LFD5 U3.3-201ENST00000362986 216 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP41Q3LFD5 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP41Q3LFD5 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 RPS4XP16-201ENST00000427198 791 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 SUMO2P1-206ENST00000445436 284 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 VN1R48P-201ENST00000448149 1036 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP41Q3LFD5 FABP5P6-201ENST00000510588 409 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 ASNSP4-201ENST00000511103 447 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 SCARNA20.4-201ENST00000516969 131 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 RNU6-889P-201ENST00000517189 103 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 SEPT10P1-201ENST00000517342 1162 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 OR5AZ1P-201ENST00000527448 943 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 PCNPP1-201ENST00000552501 511 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC093799.2-201ENST00000610062 578 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC100827.5-201ENST00000615883 426 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 AC079298.2-201ENST00000623885 459 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 AP001002.1-201ENST00000625148 1513 ntBASIC5.61□□□□□ -1.51
USP41Q3LFD5 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
USP41Q3LFD5 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms