Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC092079.1-201ENST00000558620 1985 ntBASIC4.58□□□□□ -1.68
CDX1P47902 AL022322.2-201ENST00000624072 20397 ntBASIC4.58□□□□□ -1.68
CDX1P47902 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.58□□□□□ -1.68
CDX1P47902 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
CDX1P47902 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
CDX1P47902 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.57□□□□□ -1.68
CDX1P47902 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
CDX1P47902 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 GTF2H2B-203ENST00000508065 1432 ntBASIC4.57□□□□□ -1.68
CDX1P47902 BTBD10P1-201ENST00000549824 1352 ntBASIC4.57□□□□□ -1.68
CDX1P47902 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.57□□□□□ -1.68
CDX1P47902 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 DDX18P4-201ENST00000511690 1966 ntBASIC4.57□□□□□ -1.68
CDX1P47902 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC4.57□□□□□ -1.68
CDX1P47902 RN7SKP292-201ENST00000365522 317 ntBASIC4.57□□□□□ -1.68
CDX1P47902 UBBP2-201ENST00000376781 231 ntBASIC4.57□□□□□ -1.68
CDX1P47902 SNORA17A-201ENST00000391185 133 ntBASIC4.57□□□□□ -1.68
CDX1P47902 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC4.57□□□□□ -1.68
CDX1P47902 UBE2V1P6-201ENST00000430840 422 ntBASIC4.57□□□□□ -1.68
CDX1P47902 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 DEFA9P-201ENST00000433042 285 ntBASIC4.57□□□□□ -1.68
CDX1P47902 CYCSP42-201ENST00000450823 238 ntBASIC4.57□□□□□ -1.68
CDX1P47902 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC4.57□□□□□ -1.68
CDX1P47902 RPL23AP12-201ENST00000467573 473 ntBASIC4.57□□□□□ -1.68
CDX1P47902 MTCO2P9-201ENST00000503214 694 ntBASIC4.57□□□□□ -1.68
CDX1P47902 AC093763.2-201ENST00000505334 1223 ntBASIC4.57□□□□□ -1.68
CDX1P47902 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC4.57□□□□□ -1.68
CDX1P47902 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC4.57□□□□□ -1.68
CDX1P47902 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.57□□□□□ -1.68
CDX1P47902 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC4.57□□□□□ -1.68
CDX1P47902 SEPT10P1-201ENST00000517342 1162 ntBASIC4.57□□□□□ -1.68
CDX1P47902 IGLVIV-64-201ENST00000518581 301 ntBASIC4.57□□□□□ -1.68
CDX1P47902 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC4.57□□□□□ -1.68
CDX1P47902 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 HMGN2P36-201ENST00000529541 409 ntBASIC4.57□□□□□ -1.68
CDX1P47902 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC4.57□□□□□ -1.68
CDX1P47902 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CDX1P47902 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.57□□□□□ -1.68
CDX1P47902 AC106785.3-201ENST00000564064 847 ntBASIC4.57□□□□□ -1.68
CDX1P47902 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC4.57□□□□□ -1.68
CDX1P47902 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 AC015911.5-201ENST00000587076 451 ntBASIC4.57□□□□□ -1.68
CDX1P47902 MRO-208ENST00000588444 866 ntTSL 3 BASIC4.57□□□□□ -1.68
CDX1P47902 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 AC079610.2-201ENST00000604818 690 ntBASIC4.57□□□□□ -1.68
CDX1P47902 BNIP3P19-201ENST00000605397 577 ntBASIC4.57□□□□□ -1.68
CDX1P47902 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 AC020978.9-201ENST00000624380 1141 ntBASIC4.57□□□□□ -1.68
CDX1P47902 SNORA17.5-201ENST00000630429 132 ntBASIC4.57□□□□□ -1.68
CDX1P47902 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
CDX1P47902 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.57□□□□□ -1.68
CDX1P47902 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CDX1P47902 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC4.56□□□□□ -1.68
CDX1P47902 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC4.56□□□□□ -1.68
CDX1P47902 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 RN7SKP269-201ENST00000365545 319 ntBASIC4.56□□□□□ -1.68
CDX1P47902 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CDX1P47902 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CDX1P47902 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CDX1P47902 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
CDX1P47902 AL359643.1-201ENST00000404109 423 ntBASIC4.56□□□□□ -1.68
CDX1P47902 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC4.56□□□□□ -1.68
CDX1P47902 ATF1P1-201ENST00000406040 927 ntBASIC4.56□□□□□ -1.68
CDX1P47902 RNA5SP178-201ENST00000410380 128 ntBASIC4.56□□□□□ -1.68
CDX1P47902 RNU4-27P-201ENST00000410889 139 ntBASIC4.56□□□□□ -1.68
CDX1P47902 UBE2V1P11-201ENST00000411559 285 ntBASIC4.56□□□□□ -1.68
CDX1P47902 RPL6P29-201ENST00000414863 865 ntBASIC4.56□□□□□ -1.68
CDX1P47902 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.56□□□□□ -1.68
CDX1P47902 AC009302.1-201ENST00000417147 390 ntBASIC4.56□□□□□ -1.68
CDX1P47902 TRGV6-201ENST00000417928 299 ntBASIC4.56□□□□□ -1.68
CDX1P47902 LINC01347-201ENST00000417964 355 ntBASIC4.56□□□□□ -1.68
CDX1P47902 VN1R42P-201ENST00000424651 344 ntBASIC4.56□□□□□ -1.68
CDX1P47902 AL512661.1-201ENST00000434586 1253 ntBASIC4.56□□□□□ -1.68
CDX1P47902 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.56□□□□□ -1.68
CDX1P47902 AL353093.1-201ENST00000441292 436 ntBASIC4.56□□□□□ -1.68
CDX1P47902 MOB1AP2-201ENST00000446060 614 ntBASIC4.56□□□□□ -1.68
CDX1P47902 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC4.56□□□□□ -1.68
CDX1P47902 SETP20-201ENST00000457046 852 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms