Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.87□□□□□ -1.63
SOX3P41225 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
SOX3P41225 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 NACAP7-201ENST00000407371 609 ntBASIC4.87□□□□□ -1.63
SOX3P41225 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.87□□□□□ -1.63
SOX3P41225 AL356968.2-201ENST00000412769 1257 ntBASIC4.87□□□□□ -1.63
SOX3P41225 CBX1P3-201ENST00000413296 527 ntBASIC4.87□□□□□ -1.63
SOX3P41225 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC4.87□□□□□ -1.63
SOX3P41225 AC005033.1-201ENST00000428904 813 ntBASIC4.87□□□□□ -1.63
SOX3P41225 MTCO1P45-201ENST00000431457 267 ntBASIC4.87□□□□□ -1.63
SOX3P41225 LYPLA1P1-201ENST00000434514 622 ntBASIC4.87□□□□□ -1.63
SOX3P41225 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC4.87□□□□□ -1.63
SOX3P41225 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.87□□□□□ -1.63
SOX3P41225 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.87□□□□□ -1.63
SOX3P41225 RAB28P3-201ENST00000448325 597 ntBASIC4.87□□□□□ -1.63
SOX3P41225 MTND5P8-201ENST00000449817 1083 ntBASIC4.87□□□□□ -1.63
SOX3P41225 AL389915.2-201ENST00000454576 441 ntBASIC4.87□□□□□ -1.63
SOX3P41225 Z92846.1-201ENST00000456203 268 ntBASIC4.87□□□□□ -1.63
SOX3P41225 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.87□□□□□ -1.63
SOX3P41225 RNU6-491P-201ENST00000516099 110 ntBASIC4.87□□□□□ -1.63
SOX3P41225 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SOX3P41225 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.87□□□□□ -1.63
SOX3P41225 AC022832.1-201ENST00000530718 645 ntBASIC4.87□□□□□ -1.63
SOX3P41225 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SOX3P41225 AC074029.2-201ENST00000551045 634 ntBASIC4.87□□□□□ -1.63
SOX3P41225 MIR3691-201ENST00000578066 90 ntBASIC4.87□□□□□ -1.63
SOX3P41225 MIR4472-2-201ENST00000582069 67 ntBASIC4.87□□□□□ -1.63
SOX3P41225 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.87□□□□□ -1.63
SOX3P41225 ADAD1P2-201ENST00000588476 646 ntBASIC4.87□□□□□ -1.63
SOX3P41225 AL139407.1-201ENST00000613826 1175 ntBASIC4.87□□□□□ -1.63
SOX3P41225 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SOX3P41225 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
SOX3P41225 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.87□□□□□ -1.63
SOX3P41225 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SOX3P41225 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.87□□□□□ -1.63
SOX3P41225 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SOX3P41225 MUC2-202ENST00000613187 4845 ntBASIC4.86□□□□□ -1.63
SOX3P41225 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX3P41225 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.86□□□□□ -1.63
SOX3P41225 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 AC092747.4-201ENST00000620519 1861 ntBASIC4.86□□□□□ -1.63
SOX3P41225 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SOX3P41225 U8.4-201ENST00000363626 134 ntBASIC4.86□□□□□ -1.63
SOX3P41225 RNU1-146P-201ENST00000364015 165 ntBASIC4.86□□□□□ -1.63
SOX3P41225 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX3P41225 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 SNORA70-201ENST00000384436 135 ntBASIC4.86□□□□□ -1.63
SOX3P41225 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 RN7SKP126-201ENST00000411143 300 ntBASIC4.86□□□□□ -1.63
SOX3P41225 RNU2-72P-201ENST00000411175 163 ntBASIC4.86□□□□□ -1.63
SOX3P41225 SEPT7P8-201ENST00000413308 775 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX3P41225 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SOX3P41225 AL390879.2-203ENST00000426943 1121 ntBASIC4.86□□□□□ -1.63
SOX3P41225 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.86□□□□□ -1.63
SOX3P41225 BRWD1P3-201ENST00000428816 390 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX3P41225 AC090018.1-201ENST00000434369 367 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.86□□□□□ -1.63
SOX3P41225 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC4.86□□□□□ -1.63
SOX3P41225 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.86□□□□□ -1.63
SOX3P41225 RPS12P31-201ENST00000491419 398 ntBASIC4.86□□□□□ -1.63
SOX3P41225 NIFKP7-201ENST00000503365 834 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.86□□□□□ -1.63
SOX3P41225 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.86□□□□□ -1.63
SOX3P41225 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC4.86□□□□□ -1.63
SOX3P41225 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.86□□□□□ -1.63
SOX3P41225 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.86□□□□□ -1.63
SOX3P41225 AC024940.3-201ENST00000538551 316 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC4.86□□□□□ -1.63
SOX3P41225 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.86□□□□□ -1.63
SOX3P41225 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.86□□□□□ -1.63
SOX3P41225 AC044860.2-201ENST00000561005 179 ntBASIC4.86□□□□□ -1.63
SOX3P41225 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX3P41225 AC040174.2-201ENST00000602701 465 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AC095055.1-201ENST00000603472 1113 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AC007423.1-201ENST00000605009 627 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AL136370.1-201ENST00000608166 691 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AC092574.1-201ENST00000609771 420 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AL133445.2-201ENST00000611191 527 ntBASIC4.86□□□□□ -1.63
SOX3P41225 RPSAP73-201ENST00000614820 330 ntBASIC4.86□□□□□ -1.63
SOX3P41225 AL109620.1-201ENST00000618738 1197 ntBASIC4.86□□□□□ -1.63
SOX3P41225 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX3P41225 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.86□□□□□ -1.63
SOX3P41225 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
SOX3P41225 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SOX3P41225 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms