Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
HOXC9P31274 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.5□□□□□ -1.37
HOXC9P31274 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.5□□□□□ -1.37
HOXC9P31274 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 FAM3C2-201ENST00000312214 681 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 SNORA81-201ENST00000408493 178 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 RPL23AP1-201ENST00000428990 471 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 UBE2V2P3-201ENST00000433562 437 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 AC016831.4-201ENST00000438302 307 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 RPSAP51-201ENST00000497462 645 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 RNU2-30P-201ENST00000516209 141 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC6.5□□□□□ -1.37
HOXC9P31274 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 MIR4284-201ENST00000578924 81 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.5□□□□□ -1.37
HOXC9P31274 AC020915.5-201ENST00000596836 964 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
HOXC9P31274 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HOXC9P31274 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HOXC9P31274 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
HOXC9P31274 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.49□□□□□ -1.37
HOXC9P31274 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC6.49□□□□□ -1.37
HOXC9P31274 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HOXC9P31274 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HOXC9P31274 SNORA73.1-201ENST00000363107 205 ntBASIC6.49□□□□□ -1.37
HOXC9P31274 AC007618.1-201ENST00000366455 732 ntBASIC6.49□□□□□ -1.37
HOXC9P31274 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
HOXC9P31274 AL354868.1-201ENST00000417077 482 ntBASIC6.49□□□□□ -1.37
HOXC9P31274 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC6.49□□□□□ -1.37
HOXC9P31274 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC6.49□□□□□ -1.37
HOXC9P31274 AC104971.1-201ENST00000495117 578 ntBASIC6.49□□□□□ -1.37
HOXC9P31274 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.49□□□□□ -1.37
HOXC9P31274 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.49□□□□□ -1.37
HOXC9P31274 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC6.49□□□□□ -1.37
HOXC9P31274 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC6.49□□□□□ -1.37
HOXC9P31274 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC6.49□□□□□ -1.37
HOXC9P31274 RN7SL802P-201ENST00000577858 299 ntBASIC6.49□□□□□ -1.37
HOXC9P31274 AP000919.1-201ENST00000582850 985 ntBASIC6.49□□□□□ -1.37
HOXC9P31274 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC6.49□□□□□ -1.37
HOXC9P31274 AC018695.5-201ENST00000605872 315 ntBASIC6.49□□□□□ -1.37
HOXC9P31274 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HOXC9P31274 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC6.49□□□□□ -1.37
HOXC9P31274 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
HOXC9P31274 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
HOXC9P31274 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
HOXC9P31274 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC6.49□□□□□ -1.37
HOXC9P31274 AC018628.1-201ENST00000624147 3819 ntBASIC6.49□□□□□ -1.37
HOXC9P31274 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
HOXC9P31274 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.49□□□□□ -1.37
HOXC9P31274 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC6.48□□□□□ -1.37
HOXC9P31274 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.48□□□□□ -1.37
HOXC9P31274 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
HOXC9P31274 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.48□□□□□ -1.37
HOXC9P31274 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
HOXC9P31274 AC004690.1-201ENST00000418216 328 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 CENPIP1-201ENST00000425713 902 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 RPS23P7-201ENST00000466210 444 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC6.48□□□□□ -1.37
HOXC9P31274 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC6.48□□□□□ -1.37
HOXC9P31274 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC6.48□□□□□ -1.37
HOXC9P31274 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC6.48□□□□□ -1.37
HOXC9P31274 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC6.48□□□□□ -1.37
HOXC9P31274 AC105129.1-201ENST00000560250 297 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 AC116553.2-201ENST00000564203 463 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC6.48□□□□□ -1.37
HOXC9P31274 MIR5699-201ENST00000578903 90 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 AC073091.2-201ENST00000603205 907 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 IGKV1OR2-9-201ENST00000603957 287 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 IGKV1OR2-11-201ENST00000604120 287 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 NF1P10-201ENST00000613227 742 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 AL157762.1-201ENST00000619612 415 ntBASIC6.48□□□□□ -1.37
HOXC9P31274 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC6.48□□□□□ -1.37
HOXC9P31274 RNF123-214ENST00000629802 207 ntTSL 5 BASIC6.48□□□□□ -1.37
HOXC9P31274 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HOXC9P31274 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.48□□□□□ -1.37
HOXC9P31274 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HOXC9P31274 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.48□□□□□ -1.37
HOXC9P31274 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HOXC9P31274 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HOXC9P31274 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
HOXC9P31274 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
HOXC9P31274 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.47□□□□□ -1.37
HOXC9P31274 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.47□□□□□ -1.37
HOXC9P31274 SNORD113.2-201ENST00000364166 89 ntBASIC6.47□□□□□ -1.37
HOXC9P31274 U3.22-201ENST00000391120 215 ntBASIC6.47□□□□□ -1.37
HOXC9P31274 AC240504.1-201ENST00000395709 845 ntBASIC6.47□□□□□ -1.37
HOXC9P31274 RN7SKP16-201ENST00000410180 299 ntBASIC6.47□□□□□ -1.37
HOXC9P31274 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC6.47□□□□□ -1.37
HOXC9P31274 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.47□□□□□ -1.37
HOXC9P31274 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms