Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
SMARCA1P28370 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.31□□□□□ -1.4
SMARCA1P28370 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 AL359715.4-201ENST00000606629 1436 ntBASIC6.31□□□□□ -1.4
SMARCA1P28370 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SMARCA1P28370 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.3□□□□□ -1.4
SMARCA1P28370 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SMARCA1P28370 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SMARCA1P28370 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMARCA1P28370 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMARCA1P28370 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
SMARCA1P28370 SNORA51.1-201ENST00000363243 140 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
SMARCA1P28370 DBIP1-201ENST00000401435 260 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 NPM1P4-201ENST00000414095 812 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC6.3□□□□□ -1.4
SMARCA1P28370 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
SMARCA1P28370 RPL7P55-201ENST00000450522 746 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 RN7SL197P-201ENST00000466981 299 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 RN7SL447P-201ENST00000494711 245 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.3□□□□□ -1.4
SMARCA1P28370 SUMO2P5-201ENST00000506790 245 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC6.3□□□□□ -1.4
SMARCA1P28370 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC6.3□□□□□ -1.4
SMARCA1P28370 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.3□□□□□ -1.4
SMARCA1P28370 AC010476.1-201ENST00000519111 851 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AC034205.1-201ENST00000520621 638 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC6.3□□□□□ -1.4
SMARCA1P28370 AC079064.1-201ENST00000528365 362 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AC126177.5-201ENST00000549599 178 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 OR11H3P-201ENST00000554547 982 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
SMARCA1P28370 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.3□□□□□ -1.4
SMARCA1P28370 AGGF1P5-201ENST00000567900 919 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMARCA1P28370 AP005403.1-201ENST00000579720 229 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC6.3□□□□□ -1.4
SMARCA1P28370 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMARCA1P28370 AC073137.1-201ENST00000605636 634 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AC021851.1-201ENST00000608537 1082 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AP000894.4-201ENST00000610185 483 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 BNIP3P41-202ENST00000616656 861 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AC048344.4-201ENST00000619744 527 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AC093875.1-201ENST00000623688 504 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 AC135068.5-201ENST00000624197 983 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC6.3□□□□□ -1.4
SMARCA1P28370 CASC19-264ENST00000641912 1184 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SMARCA1P28370 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
SMARCA1P28370 AC025470.1-201ENST00000510053 2032 ntBASIC6.3□□□□□ -1.4
SMARCA1P28370 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMARCA1P28370 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMARCA1P28370 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SMARCA1P28370 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
SMARCA1P28370 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.29□□□□□ -1.4
SMARCA1P28370 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.29□□□□□ -1.4
SMARCA1P28370 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SMARCA1P28370 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC6.29□□□□□ -1.4
SMARCA1P28370 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SMARCA1P28370 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SMARCA1P28370 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SMARCA1P28370 MIR133B-201ENST00000362210 119 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SMARCA1P28370 SNORA16A-201ENST00000384342 137 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 RNU6-1263P-201ENST00000384601 106 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 AL390774.1-201ENST00000411924 246 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC6.29□□□□□ -1.4
SMARCA1P28370 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC6.29□□□□□ -1.4
SMARCA1P28370 HMGB1P26-201ENST00000452520 628 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AC068587.2-201ENST00000478386 781 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 HMGB1P38-201ENST00000490557 577 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 EIF3LP3-201ENST00000495197 822 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 RN7SL284P-201ENST00000498823 275 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AC109464.1-201ENST00000511091 819 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 SEPT10P1-201ENST00000517342 1162 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 AC020937.1-201ENST00000519677 1013 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 AC118942.1-201ENST00000529674 1035 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.29□□□□□ -1.4
SMARCA1P28370 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AC005341.1-201ENST00000571086 708 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 RN7SL356P-201ENST00000582228 248 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 MIR7853-201ENST00000584820 132 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 IMMP1LP3-201ENST00000604197 224 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 AL445435.1-201ENST00000604232 665 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 AL512427.1-201ENST00000618593 349 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 AC005840.5-201ENST00000619166 599 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 BANCR-201ENST00000624238 473 ntTSL 2 BASIC6.29□□□□□ -1.4
SMARCA1P28370 AC092159.4-201ENST00000624944 550 ntBASIC6.29□□□□□ -1.4
SMARCA1P28370 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SMARCA1P28370 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SMARCA1P28370 MTCO1P11-201ENST00000429111 1528 ntBASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 145 ms