Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC099521.1-201ENST00000482557 334 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC113367.2-201ENST00000505749 160 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 GAPDHP62-201ENST00000515313 990 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 FAU-203ENST00000525297 355 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 AP000620.1-201ENST00000527147 504 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC036111.2-201ENST00000533247 901 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AC087894.1-201ENST00000538359 518 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 OLR1-209ENST00000543993 822 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXA1P49639 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.64□□□□□ -1.67
HOXA1P49639 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC040958.1-201ENST00000561102 201 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
HOXA1P49639 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 AP001160.4-201ENST00000596971 382 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC005479.3-201ENST00000602790 431 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AL445435.1-201ENST00000604232 665 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 AL135999.3-201ENST00000610501 812 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AL080312.2-201ENST00000613001 630 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AC012676.3-201ENST00000614983 479 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 OR8G7P-201ENST00000616658 848 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC092159.4-201ENST00000624944 550 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AC073488.6-201ENST00000632293 754 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC097461.1-201ENST00000568928 2821 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXA1P49639 AC117409.1-201ENST00000470499 1310 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXA1P49639 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
HOXA1P49639 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXA1P49639 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXA1P49639 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
HOXA1P49639 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.63□□□□□ -1.67
HOXA1P49639 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
HOXA1P49639 SELENOWP1-201ENST00000322792 252 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 FIG4-202ENST00000368941 791 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 RNU1-136P-201ENST00000384181 164 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AC005522.1-201ENST00000395416 346 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 GAS5-202ENST00000414075 413 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 XKRYP4-201ENST00000414395 483 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 COX5BP7-201ENST00000414780 274 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 AC241520.1-201ENST00000422654 1099 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC099782.1-201ENST00000425889 474 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 TMEM183AP1-205ENST00000432739 290 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 ARMC4P1-201ENST00000438905 707 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 TPTE2P3-201ENST00000441562 1189 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 BMS1P10-201ENST00000443754 1120 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC4.63□□□□□ -1.67
HOXA1P49639 EXOSC3P1-201ENST00000448649 500 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 XKRYP5-201ENST00000449659 483 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 RN7SL254P-201ENST00000460609 284 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 RPS3AP6-201ENST00000484430 795 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 WDR78-207ENST00000488333 613 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.63□□□□□ -1.67
HOXA1P49639 HMGN1P16-201ENST00000508308 283 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 RNA5SP441-201ENST00000516809 88 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AC134698.5-201ENST00000519444 336 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 BUD31P1-201ENST00000521828 359 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms