Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SRRM1P3-201ENST00000426911 2678 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LMX1BO60663 AC100757.1-201ENST00000616872 1835 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 MT-RNR2-201ENST00000387347 1559 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LMX1BO60663 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LMX1BO60663 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LMX1BO60663 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LMX1BO60663 RNA5SP443-201ENST00000363083 132 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 SNORD56.6-201ENST00000384569 71 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 GLS-203ENST00000409215 632 ntTSL 4 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC007161.1-204ENST00000423039 460 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.79□□□□□ -1.64
LMX1BO60663 ZNF965P-201ENST00000432501 817 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 Z99127.2-201ENST00000441426 334 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 CYCSP51-201ENST00000443545 318 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 RPS26P41-201ENST00000450370 284 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC4.79□□□□□ -1.64
LMX1BO60663 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.79□□□□□ -1.64
LMX1BO60663 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.79□□□□□ -1.64
LMX1BO60663 RN7SL188P-201ENST00000469842 285 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AC100832.1-201ENST00000471945 383 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC104982.1-201ENST00000478775 574 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.79□□□□□ -1.64
LMX1BO60663 RN7SL205P-201ENST00000490174 284 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 RN7SL547P-201ENST00000490793 290 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC4.79□□□□□ -1.64
LMX1BO60663 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LMX1BO60663 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC4.79□□□□□ -1.64
LMX1BO60663 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.79□□□□□ -1.64
LMX1BO60663 RNU6-889P-201ENST00000517189 103 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AC103833.1-201ENST00000517442 172 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AP003355.1-201ENST00000518956 587 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 MTND2P38-201ENST00000522536 667 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC4.79□□□□□ -1.64
LMX1BO60663 HAUS8P1-201ENST00000549005 542 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC4.79□□□□□ -1.64
LMX1BO60663 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 RBM22P12-201ENST00000567098 1255 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AGGF1P5-201ENST00000567900 919 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC009974.1-201ENST00000608881 455 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 MIR7155-201ENST00000615925 56 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AC245389.2-201ENST00000616023 576 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AC018926.1-201ENST00000616335 435 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
LMX1BO60663 AC242843.1-201ENST00000618702 573 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 Z99129.2-201ENST00000619967 314 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AL445528.2-201ENST00000620582 470 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 MIR8080-201ENST00000622224 89 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.79□□□□□ -1.64
LMX1BO60663 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC4.79□□□□□ -1.64
LMX1BO60663 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.79□□□□□ -1.64
LMX1BO60663 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LMX1BO60663 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC4.79□□□□□ -1.64
LMX1BO60663 AC114786.1-201ENST00000512892 1415 ntBASIC4.79□□□□□ -1.64
LMX1BO60663 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC4.79□□□□□ -1.64
LMX1BO60663 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LMX1BO60663 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 AL353796.1-201ENST00000561542 3241 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 AL034549.2-201ENST00000618285 3373 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LMX1BO60663 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 SNORD115-48-201ENST00000364764 76 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 MIR223-201ENST00000385204 110 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC009804.1-201ENST00000400949 179 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC113412.1-201ENST00000425840 504 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AL512661.1-201ENST00000434586 1253 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC4.78□□□□□ -1.64
LMX1BO60663 AL390119.1-201ENST00000440329 312 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 RPL5P25-201ENST00000441148 775 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AL513321.1-201ENST00000441175 761 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 MOB1AP2-201ENST00000446060 614 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 MTND1P31-201ENST00000449206 961 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC011225.1-201ENST00000457751 369 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 AC087672.1-201ENST00000479876 766 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms