Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 SPRR2C-201ENST00000290702 219 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC008171.1-201ENST00000395058 200 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 RPS26P38-201ENST00000414476 348 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC011998.1-201ENST00000433403 117 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 RNU1-103P-201ENST00000516502 125 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC020978.9-201ENST00000624380 1141 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 GMDS-AS1-202ENST00000505870 8217 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 RNA5SP366-201ENST00000365454 123 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC011933.1-201ENST00000413334 321 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC116533.1-201ENST00000459748 321 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC011626.1-201ENST00000604710 562 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC004836.1-201ENST00000623032 634 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AL355834.1-201ENST00000556602 3965 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 AL158163.1-201ENST00000603915 1649 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 FAM91A3P-201ENST00000456826 2544 ntBASIC4.66□□□□□ -1.66
VPS13AQ96RL7 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 ZNF365-204ENST00000395251 2695 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 AL133547.1-201ENST00000448546 220 ntBASIC4.65□□□□□ -1.66
VPS13AQ96RL7 RN7SL558P-201ENST00000497468 299 ntBASIC4.65□□□□□ -1.66
VPS13AQ96RL7 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 AL121772.2-201ENST00000614331 297 ntBASIC4.65□□□□□ -1.66
VPS13AQ96RL7 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 VN2R3P-201ENST00000422626 1412 ntBASIC4.65□□□□□ -1.66
VPS13AQ96RL7 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
VPS13AQ96RL7 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 RPL7AP61-201ENST00000443410 636 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 RPL7P15-201ENST00000461190 712 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 MIR2116-201ENST00000517221 80 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 TRAV8-5-201ENST00000537369 341 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 AC087499.8-201ENST00000578406 226 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 MIR5699-201ENST00000578903 90 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 MIR6867-201ENST00000610636 67 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 SNORA70H-201ENST00000383910 135 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 SNORA70J-201ENST00000384182 135 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 AC007179.3-201ENST00000604976 235 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 AC012409.3-201ENST00000611343 981 ntBASIC4.65□□□□□ -1.67
VPS13AQ96RL7 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS13AQ96RL7 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS13AQ96RL7 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS13AQ96RL7 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms