Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
USP39Q53GS9 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 AC016739.1-201ENST00000405359 345 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.05□□□□□ -1.44
USP39Q53GS9 RPL35AP3-201ENST00000414680 288 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 UBE2V1P9-201ENST00000414760 368 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC6.05□□□□□ -1.44
USP39Q53GS9 HMGB1P49-201ENST00000418882 569 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.05□□□□□ -1.44
USP39Q53GS9 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC6.05□□□□□ -1.44
USP39Q53GS9 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AC090018.1-201ENST00000434369 367 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 NPM1P33-201ENST00000438918 872 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 AC079922.1-201ENST00000443291 359 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 EEF1B2P5-201ENST00000444820 548 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC6.05□□□□□ -1.44
USP39Q53GS9 OR52J1P-201ENST00000450596 932 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC6.05□□□□□ -1.44
USP39Q53GS9 SLC25A51P1-201ENST00000468432 871 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.05□□□□□ -1.44
USP39Q53GS9 MTCO3P7-201ENST00000510008 774 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 MTCO2P32-201ENST00000514865 403 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 SNORA3.4-201ENST00000515969 96 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.05□□□□□ -1.44
USP39Q53GS9 MTCO2P15-201ENST00000532655 656 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 RPA2P3-201ENST00000533268 770 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AC093014.1-201ENST00000548926 724 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AC090651.1-201ENST00000567865 634 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AC104695.2-201ENST00000605056 775 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 OR7M1P-201ENST00000608946 533 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 AC131159.1-201ENST00000621854 213 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AC079776.5-201ENST00000641920 211 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
USP39Q53GS9 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 FGG-205ENST00000407946 1636 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC6.05□□□□□ -1.44
USP39Q53GS9 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
USP39Q53GS9 GTF2IP4-201ENST00000453092 2054 ntBASIC6.05□□□□□ -1.44
USP39Q53GS9 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
USP39Q53GS9 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.04□□□□□ -1.44
USP39Q53GS9 AC024587.1-201ENST00000505925 2157 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
USP39Q53GS9 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
USP39Q53GS9 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC6.04□□□□□ -1.44
USP39Q53GS9 GAPDHP24-201ENST00000328713 983 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.04□□□□□ -1.44
USP39Q53GS9 RNA5SP375-201ENST00000362975 119 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 Y_RNA.194-201ENST00000363985 102 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 RNA5SP132-201ENST00000364725 118 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 MIR421-201ENST00000365696 85 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 SFR1P1-201ENST00000403720 688 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 RAB9AP4-201ENST00000415230 609 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.04□□□□□ -1.44
USP39Q53GS9 RPS15AP30-201ENST00000420976 390 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 AL355433.1-201ENST00000422804 300 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.04□□□□□ -1.44
USP39Q53GS9 TXNP2-201ENST00000443918 295 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.04□□□□□ -1.44
USP39Q53GS9 TRY2P-201ENST00000448860 689 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC6.04□□□□□ -1.44
USP39Q53GS9 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC6.04□□□□□ -1.44
USP39Q53GS9 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC6.04□□□□□ -1.44
USP39Q53GS9 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC6.04□□□□□ -1.44
USP39Q53GS9 RPS17P11-201ENST00000474297 293 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 RPS3AP43-201ENST00000479743 781 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 AC108475.1-201ENST00000507880 950 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 GAPDHP71-201ENST00000511530 1003 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 AP000926.4-201ENST00000527351 454 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 OR4A42P-201ENST00000531397 938 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC6.04□□□□□ -1.44
USP39Q53GS9 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC6.04□□□□□ -1.44
USP39Q53GS9 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
USP39Q53GS9 AC006530.1-201ENST00000555980 571 ntBASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms