Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL356967.1-201ENST00000406305 431 ntBASIC6.85□□□□□ -1.31
MSX1P28360 SNRPFP1-201ENST00000414761 252 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC023141.10-201ENST00000415634 200 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AL161742.1-201ENST00000418154 584 ntBASIC6.85□□□□□ -1.31
MSX1P28360 NUP35P1-201ENST00000422734 947 ntBASIC6.85□□□□□ -1.31
MSX1P28360 DPY19L1P2-201ENST00000426647 915 ntBASIC6.85□□□□□ -1.31
MSX1P28360 GAPDHP19-201ENST00000431768 1005 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC6.85□□□□□ -1.31
MSX1P28360 CBX1P1-201ENST00000440184 427 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AL022237.1-201ENST00000446663 358 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC6.85□□□□□ -1.31
MSX1P28360 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 AC234771.3-201ENST00000454984 622 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC073594.1-201ENST00000462065 364 ntBASIC6.85□□□□□ -1.31
MSX1P28360 RN7SL751P-201ENST00000473281 284 ntBASIC6.85□□□□□ -1.31
MSX1P28360 RPL5P12-201ENST00000477071 851 ntBASIC6.85□□□□□ -1.31
MSX1P28360 RPL7AP30-201ENST00000482859 796 ntBASIC6.85□□□□□ -1.31
MSX1P28360 RN7SL153P-201ENST00000486501 292 ntBASIC6.85□□□□□ -1.31
MSX1P28360 RPL17P2-201ENST00000491913 451 ntBASIC6.85□□□□□ -1.31
MSX1P28360 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC6.85□□□□□ -1.31
MSX1P28360 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 AC108120.1-201ENST00000506543 991 ntBASIC6.85□□□□□ -1.31
MSX1P28360 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 RNU6-835P-201ENST00000516974 104 ntBASIC6.85□□□□□ -1.31
MSX1P28360 IGHVIII-11-1-201ENST00000522733 267 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 AC008055.1-201ENST00000547032 609 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.85□□□□□ -1.31
MSX1P28360 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC6.85□□□□□ -1.31
MSX1P28360 AC034105.3-201ENST00000565294 442 ntBASIC6.85□□□□□ -1.31
MSX1P28360 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 MIR544B-201ENST00000582372 78 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC6.85□□□□□ -1.31
MSX1P28360 MIR205HG-210ENST00000603283 455 ntTSL 3 BASIC6.85□□□□□ -1.31
MSX1P28360 SNRPGP17-201ENST00000603780 214 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC004852.1-201ENST00000605206 154 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AL451049.1-201ENST00000608672 497 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AL161734.1-201ENST00000609720 557 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC090425.1-201ENST00000610007 140 ntBASIC6.85□□□□□ -1.31
MSX1P28360 DISC2.1-201ENST00000612827 205 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AL442067.1-201ENST00000613261 223 ntBASIC6.85□□□□□ -1.31
MSX1P28360 Metazoa_SRP.167-201ENST00000614947 260 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 AC068831.8-201ENST00000620171 435 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AL732618.1-201ENST00000623251 301 ntBASIC6.85□□□□□ -1.31
MSX1P28360 TTK-211ENST00000627129 240 ntTSL 5 BASIC6.85□□□□□ -1.31
MSX1P28360 SNORA43.5-201ENST00000631270 138 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC073488.2-201ENST00000631903 751 ntBASIC6.85□□□□□ -1.31
MSX1P28360 AC026108.1-201ENST00000635444 547 ntBASIC6.85□□□□□ -1.31
MSX1P28360 SLC22A9-201ENST00000279178 2343 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 CDY1-201ENST00000306609 2321 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 CDY1B-201ENST00000306882 2321 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 IQGAP1-201ENST00000268182 7233 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 SLC6A16-202ENST00000454748 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 AC242022.1-201ENST00000638002 1565 ntTSL 5 BASIC6.85□□□□□ -1.31
MSX1P28360 FAR2-202ENST00000536681 3616 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 UBN1-208ENST00000590769 3530 ntTSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 ACOD1-201ENST00000377462 2165 ntAPPRIS P2 TSL 5 BASIC6.85□□□□□ -1.31
MSX1P28360 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 TDRD3-209ENST00000621840 2497 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 AC093909.5-201ENST00000621839 1799 ntBASIC6.85□□□□□ -1.31
MSX1P28360 SEMA6A-210ENST00000510263 3292 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 DDX10P2-201ENST00000417796 2614 ntBASIC6.84□□□□□ -1.31
MSX1P28360 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 TRIM16-212ENST00000578237 3206 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.31
MSX1P28360 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 EEF1A1P22-201ENST00000559385 1380 ntBASIC6.84□□□□□ -1.31
MSX1P28360 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 AC008676.2-202ENST00000509655 1992 ntTSL 2 BASIC6.84□□□□□ -1.31
MSX1P28360 AC116351.1-201ENST00000399869 3482 ntTSL 2 BASIC6.84□□□□□ -1.31
MSX1P28360 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC6.84□□□□□ -1.31
MSX1P28360 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC6.84□□□□□ -1.31
MSX1P28360 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC6.84□□□□□ -1.31
MSX1P28360 AC126773.4-201ENST00000612545 3043 ntBASIC6.84□□□□□ -1.31
MSX1P28360 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 AC095038.1-201ENST00000429248 1591 ntBASIC6.84□□□□□ -1.31
MSX1P28360 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC6.84□□□□□ -1.31
MSX1P28360 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 OR10A3-201ENST00000360759 1061 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
MSX1P28360 RNA5SP448-201ENST00000363151 111 ntBASIC6.84□□□□□ -1.31
MSX1P28360 RNU6-282P-201ENST00000365357 103 ntBASIC6.84□□□□□ -1.31
MSX1P28360 SNORD116-23-201ENST00000384645 92 ntBASIC6.84□□□□□ -1.31
MSX1P28360 AL390316.1-201ENST00000406279 553 ntBASIC6.84□□□□□ -1.31
MSX1P28360 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 ZNF37CP-201ENST00000406795 241 ntBASIC6.84□□□□□ -1.31
MSX1P28360 AL139135.1-201ENST00000412675 209 ntBASIC6.84□□□□□ -1.31
MSX1P28360 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.84□□□□□ -1.31
MSX1P28360 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.84□□□□□ -1.31
MSX1P28360 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
MSX1P28360 RPL5P25-201ENST00000441148 775 ntBASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms