Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.04□□□□□ -1.6
SHOX2O60902 AC093414.1-201ENST00000434712 514 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 AC013410.1-201ENST00000436223 1232 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.04□□□□□ -1.6
SHOX2O60902 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SHOX2O60902 AC073052.1-201ENST00000440417 714 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 TXNP5-201ENST00000441043 315 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 AL691482.1-201ENST00000453255 87 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SHOX2O60902 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.04□□□□□ -1.6
SHOX2O60902 RN7SL174P-201ENST00000475578 289 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 AC008410.1-201ENST00000483777 339 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC5.04□□□□□ -1.6
SHOX2O60902 AC113430.1-201ENST00000506872 718 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.04□□□□□ -1.6
SHOX2O60902 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.04□□□□□ -1.6
SHOX2O60902 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SHOX2O60902 SNORA70.20-201ENST00000516848 126 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC5.04□□□□□ -1.6
SHOX2O60902 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.04□□□□□ -1.6
SHOX2O60902 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.04□□□□□ -1.6
SHOX2O60902 CYCSP28-201ENST00000534284 321 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 AC069240.1-201ENST00000548774 375 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.04□□□□□ -1.6
SHOX2O60902 AC016180.1-201ENST00000567945 403 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC5.04□□□□□ -1.6
SHOX2O60902 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 AC004948.1-201ENST00000609858 672 ntBASIC5.04□□□□□ -1.6
SHOX2O60902 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.04□□□□□ -1.6
SHOX2O60902 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.04□□□□□ -1.6
SHOX2O60902 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.04□□□□□ -1.6
SHOX2O60902 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.04□□□□□ -1.6
SHOX2O60902 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.04□□□□□ -1.6
SHOX2O60902 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 AP001002.1-201ENST00000625148 1513 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 OR8V1P-201ENST00000395193 873 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 LRRC37BP1-201ENST00000398851 714 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.03□□□□□ -1.6
SHOX2O60902 AC079355.1-201ENST00000421770 223 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.03□□□□□ -1.6
SHOX2O60902 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.03□□□□□ -1.6
SHOX2O60902 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.03□□□□□ -1.6
SHOX2O60902 AL359839.1-201ENST00000451975 1160 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.03□□□□□ -1.6
SHOX2O60902 MYL12AP1-201ENST00000518490 515 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.03□□□□□ -1.6
SHOX2O60902 AC074050.1-201ENST00000563247 211 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.03□□□□□ -1.6
SHOX2O60902 MRPS21P7-201ENST00000566937 238 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 AL133406.3-201ENST00000606817 541 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 AL158196.1-201ENST00000616786 434 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.03□□□□□ -1.6
SHOX2O60902 AC132825.8-201ENST00000640783 297 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.03□□□□□ -1.6
SHOX2O60902 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 AC114786.1-201ENST00000512892 1415 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 AC107068.1-201ENST00000563286 4218 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SHOX2O60902 HCFC2P1-201ENST00000392864 1592 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 MTND4P26-201ENST00000415971 1359 ntBASIC5.03□□□□□ -1.6
SHOX2O60902 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.03□□□□□ -1.6
SHOX2O60902 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.02□□□□□ -1.61
SHOX2O60902 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
SHOX2O60902 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SHOX2O60902 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.02□□□□□ -1.61
SHOX2O60902 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC5.02□□□□□ -1.61
SHOX2O60902 AC105074.1-201ENST00000623380 3095 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 AC092435.4-201ENST00000623012 4159 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 RNA5SP90-201ENST00000364801 99 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 BMS1P3-201ENST00000372011 932 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 OR7E101P-201ENST00000400428 513 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 OR4K12P-201ENST00000406538 961 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 Y_RNA.625-201ENST00000411256 107 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.02□□□□□ -1.61
SHOX2O60902 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.02□□□□□ -1.61
SHOX2O60902 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.02□□□□□ -1.61
SHOX2O60902 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.02□□□□□ -1.61
SHOX2O60902 AP006222.1-205ENST00000450734 457 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SHOX2O60902 ATP5G1P3-201ENST00000463301 410 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SHOX2O60902 SIAH1P1-201ENST00000479411 923 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.02□□□□□ -1.61
SHOX2O60902 NDUFB5P1-201ENST00000508134 564 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.02□□□□□ -1.61
SHOX2O60902 RNU6-615P-201ENST00000516065 106 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 RNA5SP392-201ENST00000516905 112 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.02□□□□□ -1.61
SHOX2O60902 AC027544.3-201ENST00000535082 757 ntBASIC5.02□□□□□ -1.61
SHOX2O60902 MTND6P33-201ENST00000571794 183 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms