Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC14.22□□□□□ -0.13
PRKDCP78527 BET1L-206ENST00000486280 665 ntTSL 3 BASIC14.22□□□□□ -0.13
PRKDCP78527 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC14.22□□□□□ -0.13
PRKDCP78527 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
PRKDCP78527 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC14.22□□□□□ -0.13
PRKDCP78527 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC14.22□□□□□ -0.13
PRKDCP78527 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
PRKDCP78527 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.22□□□□□ -0.13
PRKDCP78527 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC14.21□□□□□ -0.13
PRKDCP78527 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PRKDCP78527 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PRKDCP78527 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
PRKDCP78527 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC14.21□□□□□ -0.13
PRKDCP78527 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PRKDCP78527 BMF-207ENST00000559701 630 ntTSL 3 BASIC14.21□□□□□ -0.13
PRKDCP78527 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
PRKDCP78527 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC14.21□□□□□ -0.13
PRKDCP78527 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
PRKDCP78527 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
PRKDCP78527 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PRKDCP78527 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PRKDCP78527 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PRKDCP78527 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
PRKDCP78527 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.21□□□□□ -0.13
PRKDCP78527 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.21□□□□□ -0.13
PRKDCP78527 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
PRKDCP78527 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PRKDCP78527 HLA-J-202ENST00000469281 1241 ntBASIC14.21□□□□□ -0.14
PRKDCP78527 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC14.21□□□□□ -0.14
PRKDCP78527 AL121672.3-201ENST00000608644 468 ntBASIC14.21□□□□□ -0.14
PRKDCP78527 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.21□□□□□ -0.14
PRKDCP78527 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
PRKDCP78527 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
PRKDCP78527 TERT-206ENST00000508104 2486 ntTSL 5 BASIC14.2□□□□□ -0.14
PRKDCP78527 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PRKDCP78527 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
PRKDCP78527 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC14.2□□□□□ -0.14
PRKDCP78527 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC14.2□□□□□ -0.14
PRKDCP78527 AP000867.3-201ENST00000524675 377 ntBASIC14.2□□□□□ -0.14
PRKDCP78527 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC14.2□□□□□ -0.14
PRKDCP78527 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
PRKDCP78527 C1orf229-201ENST00000623686 2258 ntBASIC14.2□□□□□ -0.14
PRKDCP78527 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC14.2□□□□□ -0.14
PRKDCP78527 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PRKDCP78527 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
PRKDCP78527 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC14.2□□□□□ -0.14
PRKDCP78527 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
PRKDCP78527 REXO1L6P-202ENST00000619970 1078 ntBASIC14.2□□□□□ -0.14
PRKDCP78527 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC14.2□□□□□ -0.14
PRKDCP78527 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PRKDCP78527 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
PRKDCP78527 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PRKDCP78527 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC14.2□□□□□ -0.14
PRKDCP78527 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PRKDCP78527 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
PRKDCP78527 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
PRKDCP78527 BX276092.5-203ENST00000456199 560 ntBASIC14.2□□□□□ -0.14
PRKDCP78527 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC14.2□□□□□ -0.14
PRKDCP78527 KRT8P20-201ENST00000423953 1409 ntBASIC14.2□□□□□ -0.14
PRKDCP78527 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
PRKDCP78527 CHCHD2P8-201ENST00000429873 447 ntBASIC14.19□□□□□ -0.14
PRKDCP78527 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.19□□□□□ -0.14
PRKDCP78527 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
PRKDCP78527 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC14.19□□□□□ -0.14
PRKDCP78527 AC140113.2-201ENST00000604370 208 ntBASIC14.19□□□□□ -0.14
PRKDCP78527 C9orf163-202ENST00000624034 2573 ntBASIC14.19□□□□□ -0.14
PRKDCP78527 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PRKDCP78527 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC14.19□□□□□ -0.14
PRKDCP78527 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
PRKDCP78527 DFFB-203ENST00000341385 572 ntTSL 5 BASIC14.19□□□□□ -0.14
PRKDCP78527 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PRKDCP78527 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC14.19□□□□□ -0.14
PRKDCP78527 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PRKDCP78527 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
PRKDCP78527 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
PRKDCP78527 AC112497.1-201ENST00000624824 639 ntBASIC14.19□□□□□ -0.14
PRKDCP78527 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PRKDCP78527 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PRKDCP78527 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC14.19□□□□□ -0.14
PRKDCP78527 AC018553.1-201ENST00000616682 1458 ntBASIC14.19□□□□□ -0.14
PRKDCP78527 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
PRKDCP78527 AL121603.2-201ENST00000557373 2117 ntBASIC14.19□□□□□ -0.14
PRKDCP78527 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC14.19□□□□□ -0.14
PRKDCP78527 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC14.18□□□□□ -0.14
PRKDCP78527 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC14.18□□□□□ -0.14
PRKDCP78527 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.18□□□□□ -0.14
PRKDCP78527 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PRKDCP78527 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC14.18□□□□□ -0.14
PRKDCP78527 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PRKDCP78527 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PRKDCP78527 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms