Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AGR3-202ENST00000402239 563 ntTSL 2 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 Z75741.2-201ENST00000417272 1167 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 SMARCE1P1-201ENST00000417747 1186 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 VN1R54P-201ENST00000435210 1049 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 OR52I1-201ENST00000450052 1050 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 RN7SL643P-201ENST00000471845 291 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 CYCSP20-201ENST00000473154 315 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC135999.1-201ENST00000478962 479 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC041039.1-201ENST00000485656 536 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 RNA5SP400-201ENST00000517155 111 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC113191.1-201ENST00000517759 403 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 GTF2IP11-201ENST00000526931 420 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 OR5BC1P-201ENST00000529327 739 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC016957.1-201ENST00000534895 309 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 MIR3915-201ENST00000578518 97 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 MIR212-201ENST00000586026 110 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 OR4G1P-201ENST00000588632 938 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC005332.4-201ENST00000592752 579 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AP000255.1-201ENST00000610276 676 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC068726.1-201ENST00000610993 341 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AL590410.1-201ENST00000617925 333 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AL359697.1-201ENST00000624879 587 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC116618.1-201ENST00000634617 774 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AL137058.3-201ENST00000624531 3099 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC006042.3-201ENST00000454684 1469 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AL136984.1-201ENST00000607611 1893 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AL121839.2-201ENST00000565058 6943 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 FAM133CP-201ENST00000332869 704 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 MIR133A2-201ENST00000347538 102 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 MIR433-201ENST00000384837 93 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 GGA1-205ENST00000405147 575 ntTSL 4 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 USP9YP20-201ENST00000419224 558 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AL049610.1-201ENST00000423374 372 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 CENPIP1-201ENST00000425713 902 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 MTND1P2-201ENST00000430604 821 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 CDY14P-201ENST00000431260 1014 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 GAPDHP19-201ENST00000431768 1005 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC128677.1-201ENST00000436016 442 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 EMC3-AS1-205ENST00000438698 534 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC122718.1-201ENST00000439448 744 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 EEF1A1P39-201ENST00000440791 250 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 USP9YP29-201ENST00000445112 563 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AL034418.1-201ENST00000448675 860 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 CDY23P-201ENST00000451661 1014 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 FAM133DP-201ENST00000464802 691 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 AL157777.1-201ENST00000468100 304 ntBASIC7.11□□□□□ -1.27
CCDC39Q9UFE4 CBX1P5-201ENST00000475330 559 ntBASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms