Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TM9SF3Q9HD45 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
TM9SF3Q9HD45 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
TM9SF3Q9HD45 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.32□□□□□ -1.56
TM9SF3Q9HD45 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
TM9SF3Q9HD45 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
TM9SF3Q9HD45 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
TM9SF3Q9HD45 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TM9SF3Q9HD45 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.32□□□□□ -1.56
TM9SF3Q9HD45 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TM9SF3Q9HD45 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 MIR105-1-201ENST00000385222 81 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 RNA5SP105-201ENST00000391123 113 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 RPL5P19-201ENST00000404228 893 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 RPA2P2-201ENST00000419698 796 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 FABP7P2-201ENST00000429946 379 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 H2AFZP6-201ENST00000444403 394 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 Z92846.1-201ENST00000456203 268 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 RPL5P22-201ENST00000480199 884 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 RNA5SP373-201ENST00000517271 95 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC122688.1-201ENST00000541494 223 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 SULT1C2P2-201ENST00000562517 294 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC011447.4-201ENST00000587562 111 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 MIR6820-201ENST00000611508 62 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AC099494.2-201ENST00000623371 978 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 AP002967.1-201ENST00000624203 539 ntBASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
TM9SF3Q9HD45 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 BTBD10P1-201ENST00000549824 1352 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 CHMP1B2P-201ENST00000399581 597 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 RIMKLBP2-201ENST00000424737 654 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 RPL7P56-201ENST00000429441 717 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 NDUFB4P8-201ENST00000435351 367 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 RPS4XP12-201ENST00000461747 709 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 PSAT1P4-201ENST00000466500 526 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC092754.1-201ENST00000472975 479 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC093890.1-201ENST00000502554 540 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC092593.2-201ENST00000513866 913 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 EIF3KP3-201ENST00000514461 639 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 SNORA26.10-201ENST00000516427 141 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 YWHABP2-201ENST00000540201 713 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 MIR7853-201ENST00000584820 132 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC104785.1-201ENST00000603220 588 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC023813.4-201ENST00000607580 580 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AL353662.3-201ENST00000625131 237 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 138.6 ms