Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS39Q96JC1 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS39Q96JC1 AC006210.2-201ENST00000367074 1545 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS39Q96JC1 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS39Q96JC1 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 RN7SKP286-201ENST00000410894 299 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 OR6C64P-201ENST00000419708 825 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 GLUD1P9-201ENST00000420997 1173 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 NAP1L4P2-201ENST00000425958 899 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 CLUHP1-201ENST00000435012 1190 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 SCAND3P1-201ENST00000439854 1060 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 AL161636.2-201ENST00000445179 927 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 RANP1-206ENST00000455094 651 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 RN7SL189P-201ENST00000468631 289 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 AC020779.1-201ENST00000478757 796 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 PPIAP19-201ENST00000486414 492 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 RN7SL447P-201ENST00000494711 245 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 EIF3LP3-201ENST00000495197 822 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 NIFKP7-201ENST00000503365 834 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 AC087888.1-201ENST00000550884 1254 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 AC034236.3-201ENST00000605999 461 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 AC010245.2-201ENST00000606908 1167 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 WBP1LP8-201ENST00000617401 327 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 RMST_5.1-201ENST00000618704 126 ntBASIC5.25□□□□□ -1.57
VPS39Q96JC1 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS39Q96JC1 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS39Q96JC1 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS39Q96JC1 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS39Q96JC1 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
VPS39Q96JC1 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS39Q96JC1 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS39Q96JC1 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AC007342.7-201ENST00000624610 2337 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AC004817.4-201ENST00000602396 3625 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 TMSB4XP4-201ENST00000323496 618 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 AC017079.1-201ENST00000333650 415 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 RNA5SP335-201ENST00000363817 110 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 CYCSP11-201ENST00000436426 315 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 RPL12P11-201ENST00000439970 501 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 CYCSP24-201ENST00000445119 316 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 CCRL1P1-201ENST00000449542 1053 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 BX842559.2-201ENST00000451418 605 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 EIF1P7-201ENST00000487533 337 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 TMEM97P2-201ENST00000517841 403 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 AC008814.1-201ENST00000603797 406 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 FAM72A-208ENST00000607379 1139 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 AL139407.1-201ENST00000613826 1175 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 AL590410.1-201ENST00000617925 333 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.24□□□□□ -1.57
VPS39Q96JC1 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms