Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 HSPA8P18-201ENST00000439846 1928 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 RNA5SP394-201ENST00000364216 119 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 RN7SKP78-201ENST00000364711 318 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 RNU6-146P-201ENST00000384602 108 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 HYALP1-201ENST00000417674 1279 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 VN1R21P-201ENST00000426703 765 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 CRIP1P1-201ENST00000427567 185 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 RPS23P6-201ENST00000466136 431 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 RPL32P33-201ENST00000487023 394 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC069304.1-201ENST00000491593 704 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC009120.1-201ENST00000493458 473 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 SUMO1P1-201ENST00000497904 306 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 ENPP7P11-201ENST00000505915 627 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 GAPDHP62-201ENST00000515313 990 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 RNU6-615P-201ENST00000516065 106 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 RNU6-941P-201ENST00000516346 108 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 SEPT10P1-201ENST00000517342 1162 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC021678.3-201ENST00000517893 476 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC139365.2-201ENST00000517972 253 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC068446.3-201ENST00000555285 382 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC012414.2-201ENST00000559474 187 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC233702.9-201ENST00000581528 203 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC090607.5-201ENST00000615692 224 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AL390318.1-201ENST00000624564 687 ntBASIC5.35□□□□□ -1.55
VMP1Q96GC9 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
VMP1Q96GC9 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VMP1Q96GC9 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VMP1Q96GC9 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VMP1Q96GC9 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VMP1Q96GC9 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
VMP1Q96GC9 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC007938.2-201ENST00000604666 2634 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC235565.1-201ENST00000456962 1325 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 SNORA70.6-201ENST00000383934 134 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 ATP5HP3-201ENST00000396994 486 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 RN7SKP97-201ENST00000410966 333 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 NIFKP3-201ENST00000417799 865 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC009784.1-201ENST00000426484 460 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 TCEA1P3-201ENST00000443005 880 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 MEMO1P4-201ENST00000453590 386 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 RPS23P2-201ENST00000463671 415 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 RPS3AP15-201ENST00000483874 781 ntBASIC5.34□□□□□ -1.55
VMP1Q96GC9 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.34□□□□□ -1.55
VMP1Q96GC9 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms