Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC211433.2-201ENST00000608433 387 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AK6-205ENST00000618980 483 ntTSL 2 BASIC6.07□□□□□ -1.44
USP39Q53GS9 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 WDR75-207ENST00000631047 270 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 AC007671.2-201ENST00000637344 619 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AC099654.13-201ENST00000639774 207 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 OR8B1P-202ENST00000641132 1178 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 AC093909.5-201ENST00000621839 1799 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
USP39Q53GS9 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
USP39Q53GS9 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.06□□□□□ -1.44
USP39Q53GS9 PDZK1P1-202ENST00000425209 1350 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
USP39Q53GS9 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.06□□□□□ -1.44
USP39Q53GS9 SUCLA2P2-201ENST00000417269 1309 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.06□□□□□ -1.44
USP39Q53GS9 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.06□□□□□ -1.44
USP39Q53GS9 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
USP39Q53GS9 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
USP39Q53GS9 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
USP39Q53GS9 RNU5B-4P-201ENST00000363508 111 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 RNU105B-201ENST00000364478 208 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 RNU6-468P-201ENST00000384003 109 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 SNORA70.9-201ENST00000384370 135 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 MIR105-2-201ENST00000385083 81 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 RNU6-1242P-201ENST00000391052 103 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
USP39Q53GS9 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.06□□□□□ -1.44
USP39Q53GS9 VN1R31P-201ENST00000417498 730 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AC126120.1-201ENST00000431082 470 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC6.06□□□□□ -1.44
USP39Q53GS9 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC6.06□□□□□ -1.44
USP39Q53GS9 MTND1P4-201ENST00000435196 415 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 FABP5P3-201ENST00000437960 408 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC6.06□□□□□ -1.44
USP39Q53GS9 AC002504.1-201ENST00000438281 691 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 SUMO2P3-201ENST00000438311 288 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AL445567.1-201ENST00000439121 144 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 ARF4P4-201ENST00000439608 520 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.06□□□□□ -1.44
USP39Q53GS9 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.06□□□□□ -1.44
USP39Q53GS9 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC6.06□□□□□ -1.44
USP39Q53GS9 RN7SL269P-201ENST00000467795 305 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AC023245.1-201ENST00000468501 517 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 NPM1P29-201ENST00000483112 803 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AC012123.2-201ENST00000485809 248 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 RN7SL57P-201ENST00000493687 290 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 RN7SL466P-201ENST00000497546 295 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC6.06□□□□□ -1.44
USP39Q53GS9 OR4A2P-201ENST00000527276 913 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.06□□□□□ -1.44
USP39Q53GS9 AC007346.2-201ENST00000564816 892 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC6.06□□□□□ -1.44
USP39Q53GS9 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.06□□□□□ -1.44
USP39Q53GS9 MIR4505-201ENST00000582238 73 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 BNIP3P30-201ENST00000601184 574 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AC125494.2-201ENST00000602431 657 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 FO393422.1-201ENST00000603908 708 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 SUMO2P15-201ENST00000604285 278 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AL021997.1-201ENST00000605757 193 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.06□□□□□ -1.44
USP39Q53GS9 AC096586.2-201ENST00000610260 441 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 AL356752.1-201ENST00000615844 593 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 AC005609.4-201ENST00000625071 447 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 Z83820.1-201ENST00000456978 1499 ntBASIC6.06□□□□□ -1.44
USP39Q53GS9 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
USP39Q53GS9 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.06□□□□□ -1.44
USP39Q53GS9 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
USP39Q53GS9 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.06□□□□□ -1.44
USP39Q53GS9 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
USP39Q53GS9 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC6.06□□□□□ -1.44
USP39Q53GS9 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
USP39Q53GS9 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
USP39Q53GS9 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
USP39Q53GS9 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USP39Q53GS9 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms