Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC008147.3-201ENST00000548666 354 ntBASIC5.47□□□□□ -1.53
LIMK1P53667 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.47□□□□□ -1.53
LIMK1P53667 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.47□□□□□ -1.53
LIMK1P53667 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.47□□□□□ -1.53
LIMK1P53667 RN7SL52P-201ENST00000584271 284 ntBASIC5.47□□□□□ -1.53
LIMK1P53667 AC011447.4-201ENST00000587562 111 ntBASIC5.47□□□□□ -1.53
LIMK1P53667 AC087283.1-201ENST00000604029 1074 ntBASIC5.47□□□□□ -1.53
LIMK1P53667 HMGB1P51-201ENST00000605166 638 ntBASIC5.47□□□□□ -1.53
LIMK1P53667 RN7SL722P-201ENST00000617780 284 ntBASIC5.47□□□□□ -1.53
LIMK1P53667 RN7SL565P-201ENST00000618246 284 ntBASIC5.47□□□□□ -1.53
LIMK1P53667 AC090527.3-201ENST00000619041 548 ntBASIC5.47□□□□□ -1.53
LIMK1P53667 AL133370.2-201ENST00000619934 439 ntBASIC5.47□□□□□ -1.53
LIMK1P53667 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.47□□□□□ -1.53
LIMK1P53667 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
LIMK1P53667 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
LIMK1P53667 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
LIMK1P53667 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.47□□□□□ -1.53
LIMK1P53667 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.47□□□□□ -1.53
LIMK1P53667 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIMK1P53667 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIMK1P53667 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIMK1P53667 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMK1P53667 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.47□□□□□ -1.53
LIMK1P53667 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMK1P53667 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMK1P53667 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMK1P53667 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
LIMK1P53667 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIMK1P53667 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
LIMK1P53667 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
LIMK1P53667 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
LIMK1P53667 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
LIMK1P53667 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.46□□□□□ -1.54
LIMK1P53667 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.46□□□□□ -1.54
LIMK1P53667 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 AC132825.1-201ENST00000463573 2247 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.46□□□□□ -1.54
LIMK1P53667 AL589826.1-201ENST00000340697 249 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 RN7SKP6-201ENST00000364795 319 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 RNA5SP87-201ENST00000384155 118 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 MTATP6P19-201ENST00000413797 659 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 AL590139.1-201ENST00000416267 400 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 COX6CP17-201ENST00000421389 185 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.46□□□□□ -1.54
LIMK1P53667 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.46□□□□□ -1.54
LIMK1P53667 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.46□□□□□ -1.54
LIMK1P53667 RSL24D1P8-201ENST00000434442 492 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 MTND2P40-201ENST00000436718 841 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.46□□□□□ -1.54
LIMK1P53667 MED28P3-201ENST00000444288 531 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 RPL31P44-201ENST00000447680 377 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 AL356981.1-201ENST00000454879 684 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.46□□□□□ -1.54
LIMK1P53667 ACA64.4-201ENST00000459070 127 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 RNU1-88P-201ENST00000459274 128 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 HESX1-202ENST00000473921 757 ntTSL 5 BASIC5.46□□□□□ -1.54
LIMK1P53667 AC007688.1-201ENST00000475592 759 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 AC087272.1-201ENST00000523624 533 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC5.46□□□□□ -1.54
LIMK1P53667 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.46□□□□□ -1.54
LIMK1P53667 OR8Q1P-201ENST00000526467 655 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.46□□□□□ -1.54
LIMK1P53667 HSPE1P2-201ENST00000554777 306 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.46□□□□□ -1.54
LIMK1P53667 AL023583.1-201ENST00000607518 1143 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 AL354696.1-201ENST00000614652 497 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.46□□□□□ -1.54
LIMK1P53667 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 AL158152.1-201ENST00000602652 1435 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 AP002512.4-202ENST00000641599 4530 ntBASIC5.46□□□□□ -1.54
LIMK1P53667 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.46□□□□□ -1.54
LIMK1P53667 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
LIMK1P53667 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.46□□□□□ -1.54
LIMK1P53667 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMK1P53667 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.54
LIMK1P53667 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
LIMK1P53667 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
LIMK1P53667 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
LIMK1P53667 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.45□□□□□ -1.54
LIMK1P53667 UGT2B26P-201ENST00000508672 1613 ntBASIC5.45□□□□□ -1.54
LIMK1P53667 AC005332.5-201ENST00000591222 2919 ntBASIC5.45□□□□□ -1.54
LIMK1P53667 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.45□□□□□ -1.54
LIMK1P53667 TCP11X1-202ENST00000622971 1372 ntBASIC5.45□□□□□ -1.54
LIMK1P53667 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.45□□□□□ -1.54
LIMK1P53667 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms