Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
CUX1P39880 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
CUX1P39880 LINC00993-201ENST00000420453 540 ntBASIC8.15□□□□□ -1.1
CUX1P39880 UQCRBP1-201ENST00000421129 336 ntBASIC8.15□□□□□ -1.1
CUX1P39880 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC8.15□□□□□ -1.1
CUX1P39880 GAPDHP14-201ENST00000450472 937 ntBASIC8.15□□□□□ -1.1
CUX1P39880 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
CUX1P39880 RPL36AP41-201ENST00000493820 306 ntBASIC8.15□□□□□ -1.1
CUX1P39880 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC8.15□□□□□ -1.1
CUX1P39880 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
CUX1P39880 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC8.15□□□□□ -1.1
CUX1P39880 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC8.15□□□□□ -1.1
CUX1P39880 AC021483.2-201ENST00000567415 758 ntBASIC8.15□□□□□ -1.1
CUX1P39880 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC8.15□□□□□ -1.1
CUX1P39880 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC8.15□□□□□ -1.1
CUX1P39880 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC8.15□□□□□ -1.1
CUX1P39880 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC8.15□□□□□ -1.1
CUX1P39880 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC8.15□□□□□ -1.1
CUX1P39880 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
CUX1P39880 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
CUX1P39880 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC8.15□□□□□ -1.11
CUX1P39880 AC073365.1-203ENST00000641055 1992 ntBASIC8.14□□□□□ -1.11
CUX1P39880 RMST-209ENST00000639542 3269 ntTSL 5 BASIC8.14□□□□□ -1.11
CUX1P39880 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CUX1P39880 MIR659-201ENST00000384963 97 ntBASIC8.14□□□□□ -1.11
CUX1P39880 RPL31-204ENST00000409038 817 ntTSL 2 BASIC8.14□□□□□ -1.11
CUX1P39880 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC8.14□□□□□ -1.11
CUX1P39880 COX6CP13-201ENST00000428703 226 ntBASIC8.14□□□□□ -1.11
CUX1P39880 RPL34P27-201ENST00000428810 349 ntBASIC8.14□□□□□ -1.11
CUX1P39880 RPL12P28-201ENST00000430852 489 ntBASIC8.14□□□□□ -1.11
CUX1P39880 FHP1-201ENST00000442741 703 ntBASIC8.14□□□□□ -1.11
CUX1P39880 AC079168.2-201ENST00000453977 416 ntBASIC8.14□□□□□ -1.11
CUX1P39880 AC021193.1-201ENST00000511607 420 ntBASIC8.14□□□□□ -1.11
CUX1P39880 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC8.14□□□□□ -1.11
CUX1P39880 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC8.14□□□□□ -1.11
CUX1P39880 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC8.14□□□□□ -1.11
CUX1P39880 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
CUX1P39880 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC8.14□□□□□ -1.11
CUX1P39880 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CUX1P39880 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CUX1P39880 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC8.14□□□□□ -1.11
CUX1P39880 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
CUX1P39880 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CUX1P39880 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC8.14□□□□□ -1.11
CUX1P39880 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CUX1P39880 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
CUX1P39880 SNX10-203ENST00000409367 746 ntTSL 5 BASIC8.13□□□□□ -1.11
CUX1P39880 AC138761.5-201ENST00000433967 325 ntBASIC8.13□□□□□ -1.11
CUX1P39880 YWHAZP2-201ENST00000440317 728 ntBASIC8.13□□□□□ -1.11
CUX1P39880 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC8.13□□□□□ -1.11
CUX1P39880 AC133555.2-201ENST00000550213 292 ntBASIC8.13□□□□□ -1.11
CUX1P39880 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC8.13□□□□□ -1.11
CUX1P39880 AC004232.3-201ENST00000622977 525 ntBASIC8.13□□□□□ -1.11
CUX1P39880 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC8.13□□□□□ -1.11
CUX1P39880 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC8.13□□□□□ -1.11
CUX1P39880 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC8.13□□□□□ -1.11
CUX1P39880 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CUX1P39880 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC8.13□□□□□ -1.11
CUX1P39880 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC8.13□□□□□ -1.11
CUX1P39880 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CUX1P39880 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
CUX1P39880 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CUX1P39880 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
CUX1P39880 ST13P16-201ENST00000401760 781 ntBASIC8.13□□□□□ -1.11
CUX1P39880 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
CUX1P39880 RN7SKP27-201ENST00000410684 333 ntBASIC8.13□□□□□ -1.11
CUX1P39880 AL158827.1-201ENST00000416300 391 ntBASIC8.13□□□□□ -1.11
CUX1P39880 RPL17P36-201ENST00000420302 549 ntBASIC8.13□□□□□ -1.11
CUX1P39880 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC8.13□□□□□ -1.11
CUX1P39880 AC073052.1-201ENST00000440417 714 ntBASIC8.13□□□□□ -1.11
CUX1P39880 RNA5SP464-201ENST00000516251 108 ntBASIC8.13□□□□□ -1.11
CUX1P39880 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC8.13□□□□□ -1.11
CUX1P39880 AC084824.1-201ENST00000550917 1005 ntBASIC8.13□□□□□ -1.11
CUX1P39880 NDUFB4P11-201ENST00000560510 395 ntBASIC8.13□□□□□ -1.11
CUX1P39880 AC012409.3-201ENST00000611343 981 ntBASIC8.13□□□□□ -1.11
CUX1P39880 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CUX1P39880 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
CUX1P39880 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
CUX1P39880 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC8.12□□□□□ -1.11
CUX1P39880 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC8.12□□□□□ -1.11
CUX1P39880 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC8.12□□□□□ -1.11
CUX1P39880 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC8.12□□□□□ -1.11
CUX1P39880 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC8.12□□□□□ -1.11
CUX1P39880 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
CUX1P39880 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC8.12□□□□□ -1.11
CUX1P39880 TLK1P1-201ENST00000456760 2440 ntBASIC8.12□□□□□ -1.11
CUX1P39880 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC8.12□□□□□ -1.11
CUX1P39880 RNU1-82P-201ENST00000390851 165 ntBASIC8.12□□□□□ -1.11
CUX1P39880 RNA5SP241-201ENST00000391326 114 ntBASIC8.12□□□□□ -1.11
CUX1P39880 RAD23BP1-201ENST00000421404 1227 ntBASIC8.12□□□□□ -1.11
CUX1P39880 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC8.12□□□□□ -1.11
CUX1P39880 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC8.12□□□□□ -1.11
CUX1P39880 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC8.12□□□□□ -1.11
CUX1P39880 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC8.12□□□□□ -1.11
CUX1P39880 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC8.12□□□□□ -1.11
CUX1P39880 AL049794.2-201ENST00000616301 365 ntBASIC8.12□□□□□ -1.11
CUX1P39880 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC8.12□□□□□ -1.11
CUX1P39880 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
CUX1P39880 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
CUX1P39880 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms