Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.83□□□□□ -1.64
COL5A1P20908 NDUFB4P8-201ENST00000435351 367 ntBASIC4.83□□□□□ -1.64
COL5A1P20908 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC4.83□□□□□ -1.64
COL5A1P20908 RPL10P17-201ENST00000453852 316 ntBASIC4.83□□□□□ -1.64
COL5A1P20908 RPL23AP56-201ENST00000460778 453 ntBASIC4.83□□□□□ -1.64
COL5A1P20908 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC4.83□□□□□ -1.64
COL5A1P20908 AC012339.2-201ENST00000523996 453 ntBASIC4.83□□□□□ -1.64
COL5A1P20908 AC138701.1-201ENST00000524329 714 ntBASIC4.83□□□□□ -1.64
COL5A1P20908 AC009643.1-201ENST00000532030 391 ntBASIC4.83□□□□□ -1.64
COL5A1P20908 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A1P20908 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.83□□□□□ -1.64
COL5A1P20908 AC040958.1-201ENST00000561102 201 ntBASIC4.83□□□□□ -1.64
COL5A1P20908 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.83□□□□□ -1.64
COL5A1P20908 AC019322.1-201ENST00000571869 389 ntBASIC4.83□□□□□ -1.64
COL5A1P20908 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.83□□□□□ -1.64
COL5A1P20908 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A1P20908 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC4.83□□□□□ -1.64
COL5A1P20908 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
COL5A1P20908 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
COL5A1P20908 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
COL5A1P20908 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A1P20908 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL5A1P20908 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A1P20908 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A1P20908 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A1P20908 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 RNA5SP388-201ENST00000362584 119 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 AC007618.1-201ENST00000366455 732 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 U3.30-201ENST00000391308 210 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A1P20908 HYALP1-201ENST00000417674 1279 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 RPL12P43-201ENST00000420608 499 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 AC234779.1-201ENST00000425910 285 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 AC017019.1-201ENST00000426129 261 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 CYCSP11-201ENST00000436426 315 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 AL359265.1-201ENST00000440296 795 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 AC044797.1-201ENST00000445744 679 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 AC000111.2-201ENST00000448200 210 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 OR1H1P-201ENST00000448731 937 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.82□□□□□ -1.64
COL5A1P20908 RPS17P2-201ENST00000461663 408 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 AC022034.3-201ENST00000471393 478 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 PPM1AP1-201ENST00000502740 1135 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 AC097486.1-201ENST00000515331 210 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 AC026688.1-201ENST00000520639 1168 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.82□□□□□ -1.64
COL5A1P20908 SOX5P1-201ENST00000524155 1127 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.82□□□□□ -1.64
COL5A1P20908 BNIP3P5-201ENST00000562290 498 ntBASIC4.82□□□□□ -1.64
COL5A1P20908 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A1P20908 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC4.82□□□□□ -1.64
COL5A1P20908 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A1P20908 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.82□□□□□ -1.64
COL5A1P20908 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL5A1P20908 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A1P20908 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL5A1P20908 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
COL5A1P20908 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
COL5A1P20908 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 RNA5SP191-201ENST00000362585 102 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 RNA5SP345-201ENST00000410646 108 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AC005154.2-201ENST00000438110 379 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 RN7SL189P-201ENST00000468631 289 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 OR52A4P-201ENST00000472867 958 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AC116562.1-201ENST00000485355 781 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.81□□□□□ -1.64
COL5A1P20908 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.81□□□□□ -1.64
COL5A1P20908 AC079064.1-201ENST00000528365 362 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC4.81□□□□□ -1.64
COL5A1P20908 AC027216.1-201ENST00000577726 685 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AC092653.1-201ENST00000608509 531 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 MLECP1-201ENST00000615893 709 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.81□□□□□ -1.64
COL5A1P20908 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC4.81□□□□□ -1.64
COL5A1P20908 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC4.81□□□□□ -1.64
COL5A1P20908 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 AC125257.1-201ENST00000560400 2930 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 ZNF402P-201ENST00000404435 3100 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC4.81□□□□□ -1.64
COL5A1P20908 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.81□□□□□ -1.64
COL5A1P20908 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 AC010928.1-201ENST00000592477 1447 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 Z98755.1-201ENST00000407015 1384 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms