Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 SNORA70.11-201ENST00000515987 138 ntBASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 SNORA70.13-201ENST00000516116 138 ntBASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 AC012400.1-201ENST00000518452 381 ntBASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 AC011626.1-201ENST00000604710 562 ntBASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 AL359757.1-201ENST00000623176 255 ntBASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 AP000756.2-201ENST00000624168 2567 ntBASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC9.74□□□□□ -0.85
SHROOM4Q9ULL8 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 RNU4-64P-201ENST00000410795 131 ntBASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 AC012512.1-201ENST00000446594 718 ntBASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 AC091180.1-201ENST00000462104 372 ntBASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 NIP7P2-201ENST00000485801 544 ntBASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 AC147055.1-201ENST00000509261 750 ntBASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 ARL1-211ENST00000551828 776 ntTSL 5 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 AL138960.1-201ENST00000613838 513 ntBASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 AC000095.2-202ENST00000637415 154 ntBASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 BX284613.1-201ENST00000452221 1641 ntBASIC9.73□□□□□ -0.85
SHROOM4Q9ULL8 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 RN7SKP227-201ENST00000364445 330 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 RPL34P27-201ENST00000428810 349 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 RPS29P10-201ENST00000439197 166 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 OR7E125P-201ENST00000443450 846 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 TXNP2-201ENST00000443918 295 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AL354714.3-201ENST00000447284 493 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AC020779.1-201ENST00000478757 796 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 EIF1AXP2-201ENST00000555940 413 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 CCDC58P3-201ENST00000590792 430 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AP001521.2-201ENST00000608772 546 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AC243960.7-201ENST00000623532 707 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AL589994.1-201ENST00000404962 340 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 MIR1193-201ENST00000408109 78 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AC099670.2-201ENST00000435130 321 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 RN7SL604P-201ENST00000492589 296 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 RPS26P24-201ENST00000497656 331 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 ASB8-204ENST00000536071 568 ntTSL 4 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AL445423.1-201ENST00000609941 536 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AC011944.2-201ENST00000624440 683 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 AL929601.4-201ENST00000613011 1341 ntBASIC9.72□□□□□ -0.85
SHROOM4Q9ULL8 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.85
SHROOM4Q9ULL8 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
SHROOM4Q9ULL8 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC9.71□□□□□ -0.85
SHROOM4Q9ULL8 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
SHROOM4Q9ULL8 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
SHROOM4Q9ULL8 MIR589-201ENST00000385238 99 ntBASIC9.71□□□□□ -0.86
SHROOM4Q9ULL8 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
SHROOM4Q9ULL8 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
SHROOM4Q9ULL8 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC9.71□□□□□ -0.86
SHROOM4Q9ULL8 MTND4LP17-201ENST00000414607 293 ntBASIC9.71□□□□□ -0.86
SHROOM4Q9ULL8 OR52J1P-201ENST00000450596 932 ntBASIC9.71□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms