Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
MSH6P52701 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
MSH6P52701 AL590240.1-201ENST00000334118 313 ntBASIC7.03□□□□□ -1.28
MSH6P52701 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
MSH6P52701 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
MSH6P52701 AL050305.1-201ENST00000399993 1230 ntBASIC7.03□□□□□ -1.28
MSH6P52701 AC023141.6-201ENST00000429418 337 ntBASIC7.03□□□□□ -1.28
MSH6P52701 AL136455.1-201ENST00000441083 1240 ntBASIC7.03□□□□□ -1.28
MSH6P52701 ARL2BPP10-201ENST00000446487 531 ntBASIC7.03□□□□□ -1.28
MSH6P52701 TCEA1P1-201ENST00000449716 880 ntBASIC7.03□□□□□ -1.28
MSH6P52701 AC091912.1-201ENST00000511351 248 ntBASIC7.03□□□□□ -1.28
MSH6P52701 AC093840.1-201ENST00000511599 336 ntBASIC7.03□□□□□ -1.28
MSH6P52701 MIR4420-201ENST00000583944 77 ntBASIC7.03□□□□□ -1.28
MSH6P52701 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC7.03□□□□□ -1.28
MSH6P52701 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC7.03□□□□□ -1.28
MSH6P52701 RPL12P25-202ENST00000598100 674 ntBASIC7.03□□□□□ -1.28
MSH6P52701 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC7.03□□□□□ -1.28
MSH6P52701 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC7.03□□□□□ -1.28
MSH6P52701 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
MSH6P52701 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC7.03□□□□□ -1.28
MSH6P52701 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC7.02□□□□□ -1.28
MSH6P52701 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.28
MSH6P52701 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC7.02□□□□□ -1.28
MSH6P52701 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSH6P52701 AC108751.5-201ENST00000492880 1336 ntBASIC7.02□□□□□ -1.29
MSH6P52701 AL355488.2-201ENST00000609909 2850 ntBASIC7.02□□□□□ -1.29
MSH6P52701 RNA5SP447-201ENST00000363749 119 ntBASIC7.02□□□□□ -1.29
MSH6P52701 MIR134-201ENST00000385258 73 ntBASIC7.02□□□□□ -1.29
MSH6P52701 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC7.02□□□□□ -1.29
MSH6P52701 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC7.02□□□□□ -1.29
MSH6P52701 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
MSH6P52701 RPL7P57-201ENST00000423238 740 ntBASIC7.02□□□□□ -1.29
MSH6P52701 LINC02210-201ENST00000444561 288 ntBASIC7.02□□□□□ -1.29
MSH6P52701 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC7.02□□□□□ -1.29
MSH6P52701 AC109327.1-201ENST00000471666 403 ntBASIC7.02□□□□□ -1.29
MSH6P52701 NIP7P2-201ENST00000485801 544 ntBASIC7.02□□□□□ -1.29
MSH6P52701 OR4A43P-201ENST00000532938 908 ntBASIC7.02□□□□□ -1.29
MSH6P52701 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC7.02□□□□□ -1.29
MSH6P52701 AP005119.2-201ENST00000579735 1105 ntBASIC7.02□□□□□ -1.29
MSH6P52701 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC7.02□□□□□ -1.29
MSH6P52701 AC067959.1-201ENST00000604334 379 ntBASIC7.02□□□□□ -1.29
MSH6P52701 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC7.02□□□□□ -1.29
MSH6P52701 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSH6P52701 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
MSH6P52701 AC004076.2-201ENST00000620532 3323 ntBASIC7.02□□□□□ -1.29
MSH6P52701 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
MSH6P52701 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
MSH6P52701 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
MSH6P52701 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC7.01□□□□□ -1.29
MSH6P52701 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSH6P52701 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSH6P52701 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSH6P52701 AL138820.1-201ENST00000617901 5305 ntBASIC7.01□□□□□ -1.29
MSH6P52701 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
MSH6P52701 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
MSH6P52701 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC7.01□□□□□ -1.29
MSH6P52701 SNORA37-201ENST00000384504 129 ntBASIC7.01□□□□□ -1.29
MSH6P52701 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC7.01□□□□□ -1.29
MSH6P52701 REG1CP-206ENST00000447469 496 ntBASIC7.01□□□□□ -1.29
MSH6P52701 AC010733.1-201ENST00000451515 401 ntBASIC7.01□□□□□ -1.29
MSH6P52701 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC7.01□□□□□ -1.29
MSH6P52701 AC010618.1-201ENST00000469924 477 ntBASIC7.01□□□□□ -1.29
MSH6P52701 AC020779.1-201ENST00000478757 796 ntBASIC7.01□□□□□ -1.29
MSH6P52701 AC097173.1-201ENST00000505862 819 ntBASIC7.01□□□□□ -1.29
MSH6P52701 AC133555.2-201ENST00000550213 292 ntBASIC7.01□□□□□ -1.29
MSH6P52701 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC7.01□□□□□ -1.29
MSH6P52701 VN1R85P-201ENST00000601587 426 ntBASIC7.01□□□□□ -1.29
MSH6P52701 AC093388.1-201ENST00000609166 430 ntBASIC7.01□□□□□ -1.29
MSH6P52701 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC7.01□□□□□ -1.29
MSH6P52701 DLEU1_1.1-201ENST00000618107 190 ntBASIC7.01□□□□□ -1.29
MSH6P52701 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC7.01□□□□□ -1.29
MSH6P52701 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
MSH6P52701 AC100757.1-201ENST00000616872 1835 ntBASIC7.01□□□□□ -1.29
MSH6P52701 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSH6P52701 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSH6P52701 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
MSH6P52701 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
MSH6P52701 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSH6P52701 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
MSH6P52701 AL359715.3-201ENST00000569267 2123 ntBASIC7□□□□□ -1.29
MSH6P52701 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
MSH6P52701 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
MSH6P52701 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSH6P52701 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
MSH6P52701 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC7□□□□□ -1.29
MSH6P52701 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
MSH6P52701 CCT8P1-201ENST00000413611 1657 ntBASIC7□□□□□ -1.29
MSH6P52701 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
MSH6P52701 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC7□□□□□ -1.29
MSH6P52701 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
MSH6P52701 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC7□□□□□ -1.29
MSH6P52701 RPL31-204ENST00000409038 817 ntTSL 2 BASIC7□□□□□ -1.29
MSH6P52701 RSU1P3-201ENST00000412878 835 ntBASIC7□□□□□ -1.29
MSH6P52701 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC7□□□□□ -1.29
MSH6P52701 Z95152.1-201ENST00000453556 656 ntBASIC7□□□□□ -1.29
MSH6P52701 MTND2P28-201ENST00000457540 1044 ntBASIC7□□□□□ -1.29
MSH6P52701 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSH6P52701 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC7□□□□□ -1.29
MSH6P52701 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC7□□□□□ -1.29
MSH6P52701 AP000619.2-201ENST00000546014 969 ntBASIC7□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms