Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DDX18P4-201ENST00000511690 1966 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 DOCK11P1-201ENST00000553480 5932 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 SGO1P2-201ENST00000429458 1589 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 ECM1P2-201ENST00000503354 1577 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 Y_RNA.192-201ENST00000363977 102 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 RNA5SP232-201ENST00000364144 119 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 RNU4-4P-201ENST00000364588 130 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC093719.1-202ENST00000392735 373 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 HMGB3P7-201ENST00000400214 611 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 GTF2IP23-201ENST00000423746 351 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 RPL21P43-201ENST00000425440 472 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC108479.1-201ENST00000431142 427 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 GAPDHP59-201ENST00000435908 267 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 GSTA7P-201ENST00000438425 448 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 EEF1B2P5-201ENST00000444820 548 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 MTCO2P7-201ENST00000446518 666 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AL109741.2-201ENST00000455561 343 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 RNU7-125P-201ENST00000458760 62 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 RN7SL168P-201ENST00000463821 279 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AL355032.1-201ENST00000472981 438 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 MARK2P8-201ENST00000476069 952 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 GAPDHP39-201ENST00000481866 979 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 NAA50-206ENST00000493454 964 ntTSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC122718.2-201ENST00000505325 591 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC091874.2-201ENST00000505889 720 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC111000.2-201ENST00000507775 550 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC018797.1-201ENST00000510791 255 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC026782.2-201ENST00000510845 636 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 RNA5SP441-201ENST00000516809 88 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 IGJP1-201ENST00000522682 475 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC036111.2-201ENST00000533247 901 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC092747.2-201ENST00000545069 983 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 MIR4666A-201ENST00000580160 79 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC106791.2-201ENST00000604680 391 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC100767.2-201ENST00000604840 693 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC069545.1-201ENST00000605671 358 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 RPSAP75-201ENST00000605848 301 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AL352984.2-202ENST00000613699 155 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC079248.2-201ENST00000623779 326 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AC073530.2-201ENST00000623987 261 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 AL683826.1-201ENST00000624104 627 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 VPS35P1-201ENST00000563400 1518 ntBASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
TRIM39Q9HCM9 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms