Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC093267.1-201ENST00000489176 961 ntBASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 AC015864.1-201ENST00000496512 544 ntBASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 RPS17P5-201ENST00000498293 408 ntBASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 AC008676.3-201ENST00000521237 435 ntBASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 AC013701.1-201ENST00000522657 465 ntBASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 OR11J2P-201ENST00000555298 907 ntBASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 AC025857.2-201ENST00000602711 238 ntBASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 SAMMSON-213ENST00000641336 1521 ntBASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
HDDC3Q8N4P3 AL031595.2-201ENST00000624215 19071 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AL353796.1-201ENST00000561542 3241 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 OR55B1P-203ENST00000641518 2602 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC016745.2-201ENST00000608834 3443 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 CHMP1B2P-201ENST00000399581 597 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AL109941.1-201ENST00000401925 229 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AL136131.1-201ENST00000406079 803 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 DUTP5-201ENST00000406790 469 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 GAPDHP25-201ENST00000447061 1001 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC092754.1-201ENST00000472975 479 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC136777.2-201ENST00000522979 358 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC092490.3-201ENST00000545370 572 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC009962.1-201ENST00000567327 3813 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC005084.1-201ENST00000605160 304 ntBASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
HDDC3Q8N4P3 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 AC027228.2-201ENST00000567141 2154 ntBASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 U3.10-201ENST00000364459 214 ntBASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 RNU4-4P-201ENST00000364588 130 ntBASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 HSPA8P15-201ENST00000401676 786 ntBASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 AL354868.1-201ENST00000417077 482 ntBASIC5.41□□□□□ -1.54
HDDC3Q8N4P3 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms