Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
USP39Q53GS9 MIR1273E-201ENST00000581165 102 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC6.1□□□□□ -1.43
USP39Q53GS9 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC096861.1-201ENST00000616652 240 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 AL590410.1-201ENST00000617925 333 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AL691477.1-201ENST00000624398 162 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 AC092192.1-201ENST00000633154 1018 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC005225.5-201ENST00000623547 2225 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC092692.1-201ENST00000623625 2595 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
USP39Q53GS9 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC6.09□□□□□ -1.43
USP39Q53GS9 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
USP39Q53GS9 AC079753.1-201ENST00000623243 3868 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.09□□□□□ -1.43
USP39Q53GS9 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.09□□□□□ -1.43
USP39Q53GS9 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
USP39Q53GS9 FUNDC2P3-201ENST00000334716 533 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 MIR16-2-201ENST00000362117 81 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 RNU6-1214P-201ENST00000363650 109 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.09□□□□□ -1.43
USP39Q53GS9 OR2AT2P-201ENST00000413438 905 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
USP39Q53GS9 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC6.09□□□□□ -1.43
USP39Q53GS9 AL392003.1-201ENST00000434394 243 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 AL163193.1-201ENST00000444895 788 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 HMGB1P26-201ENST00000452520 628 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 RPS27AP3-201ENST00000453803 454 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 GEMIN2P1-201ENST00000454246 752 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 ATG12P2-201ENST00000456830 416 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 AOX3P-204ENST00000491025 2107 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.09□□□□□ -1.43
USP39Q53GS9 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 AP003461.1-201ENST00000528866 78 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC6.09□□□□□ -1.43
USP39Q53GS9 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC6.09□□□□□ -1.43
USP39Q53GS9 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.09□□□□□ -1.43
USP39Q53GS9 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC6.09□□□□□ -1.43
USP39Q53GS9 MTND4P33-201ENST00000556706 766 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC6.09□□□□□ -1.43
USP39Q53GS9 MIR3189-201ENST00000578735 73 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.09□□□□□ -1.43
USP39Q53GS9 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 OR7E18P-201ENST00000592589 702 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.09□□□□□ -1.43
USP39Q53GS9 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 MIR1264-201ENST00000616374 69 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 AL157770.1-201ENST00000623049 439 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 AC079298.2-201ENST00000623885 459 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC6.09□□□□□ -1.43
USP39Q53GS9 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP39Q53GS9 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.09□□□□□ -1.43
USP39Q53GS9 PROS2P-201ENST00000474651 1951 ntBASIC6.09□□□□□ -1.43
USP39Q53GS9 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.09□□□□□ -1.43
USP39Q53GS9 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
USP39Q53GS9 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.44
USP39Q53GS9 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.09□□□□□ -1.44
USP39Q53GS9 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
USP39Q53GS9 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC6.08□□□□□ -1.44
USP39Q53GS9 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.08□□□□□ -1.44
USP39Q53GS9 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 CASC19-255ENST00000641733 1385 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 SAMMSON-210ENST00000641260 1308 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AC073365.1-203ENST00000641055 1992 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 RAD1P1-201ENST00000231383 813 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 Y_RNA.62-201ENST00000362840 99 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 RN7SKP160-201ENST00000363804 340 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AC234772.1-201ENST00000377927 937 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.08□□□□□ -1.44
USP39Q53GS9 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC6.08□□□□□ -1.44
USP39Q53GS9 RPL7P58-201ENST00000402913 758 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms