Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC087752.1-201ENST00000391360 558 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AL512422.1-201ENST00000407033 553 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 RPL12P28-201ENST00000430852 489 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC005189.1-201ENST00000431286 310 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 DEFA9P-201ENST00000433042 285 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 NXT1P1-201ENST00000458481 316 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC093719.1-201ENST00000480427 441 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC099521.1-201ENST00000482557 334 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 ST13P12-201ENST00000508958 1094 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC005351.1-201ENST00000511152 786 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC112673.1-201ENST00000513168 575 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 RN7SKP34-201ENST00000516142 244 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 MAL2-205ENST00000521048 575 ntTSL 4 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AP001636.2-201ENST00000525517 696 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC079600.1-201ENST00000550326 297 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC006530.1-201ENST00000555980 571 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 COX6CP7-201ENST00000597056 208 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AL513327.3-201ENST00000602618 469 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC002487.1-201ENST00000604565 994 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC079610.2-201ENST00000604818 690 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 FAM27E4-201ENST00000605259 342 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC079395.3-201ENST00000615161 484 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC004232.3-201ENST00000622977 525 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC019226.2-201ENST00000625973 424 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 MIR4302-201ENST00000638058 60 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AC011933.2-201ENST00000578539 2790 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC015689.2-201ENST00000528172 1738 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AL592429.1-201ENST00000403909 1473 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 RNU5B-1-201ENST00000363286 116 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 RN7SKP292-201ENST00000365522 317 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AL672167.2-201ENST00000377164 879 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 GAPDHP15-201ENST00000398586 975 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 MTCO2P21-201ENST00000419780 677 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 ETF1P3-201ENST00000430422 1160 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC126120.1-201ENST00000431082 470 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 SETP8-201ENST00000435341 628 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 OR10R1P-201ENST00000441524 1141 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AL591719.1-201ENST00000444669 744 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC239798.3-201ENST00000454459 408 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 RPL12P39-201ENST00000455456 496 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC093166.4-201ENST00000457867 318 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 RPL6P9-201ENST00000466502 859 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 RN7SL57P-201ENST00000493687 290 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC106872.4-201ENST00000510050 523 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 RN7SKP253-201ENST00000516424 309 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 SNORA31.13-201ENST00000516624 135 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC112191.2-201ENST00000522428 333 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC013701.1-201ENST00000522657 465 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 OR10V3P-201ENST00000525712 725 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC126615.2-201ENST00000553003 515 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms