Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PTP4A1P3-201ENST00000433661 420 ntBASIC5.04□□□□□ -1.6
SSX4O60224 SUMO2P3-201ENST00000438311 288 ntBASIC5.04□□□□□ -1.6
SSX4O60224 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.04□□□□□ -1.6
SSX4O60224 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.04□□□□□ -1.6
SSX4O60224 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SSX4O60224 AC004129.2-201ENST00000457229 287 ntBASIC5.04□□□□□ -1.6
SSX4O60224 AC078857.1-201ENST00000469870 667 ntBASIC5.04□□□□□ -1.6
SSX4O60224 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SSX4O60224 AC015908.1-201ENST00000478739 476 ntBASIC5.04□□□□□ -1.6
SSX4O60224 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.04□□□□□ -1.6
SSX4O60224 GAPDHP71-201ENST00000511530 1003 ntBASIC5.04□□□□□ -1.6
SSX4O60224 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.04□□□□□ -1.6
SSX4O60224 ATP5LP3-201ENST00000514223 304 ntBASIC5.04□□□□□ -1.6
SSX4O60224 IGHV3-63-201ENST00000518422 341 ntBASIC5.04□□□□□ -1.6
SSX4O60224 OR4A46P-201ENST00000527255 933 ntBASIC5.04□□□□□ -1.6
SSX4O60224 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC5.04□□□□□ -1.6
SSX4O60224 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.04□□□□□ -1.6
SSX4O60224 OSBPL9P3-201ENST00000534523 595 ntBASIC5.04□□□□□ -1.6
SSX4O60224 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.04□□□□□ -1.6
SSX4O60224 AC021483.2-201ENST00000567415 758 ntBASIC5.04□□□□□ -1.6
SSX4O60224 AC010547.6-201ENST00000571789 193 ntBASIC5.04□□□□□ -1.6
SSX4O60224 MIR4489-201ENST00000578869 62 ntBASIC5.04□□□□□ -1.6
SSX4O60224 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.04□□□□□ -1.6
SSX4O60224 MIR4443-201ENST00000585052 53 ntBASIC5.04□□□□□ -1.6
SSX4O60224 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SSX4O60224 AL163051.2-201ENST00000618976 735 ntBASIC5.04□□□□□ -1.6
SSX4O60224 AC097460.3-201ENST00000623099 442 ntBASIC5.04□□□□□ -1.6
SSX4O60224 AL691477.1-201ENST00000624398 162 ntBASIC5.04□□□□□ -1.6
SSX4O60224 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SSX4O60224 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SSX4O60224 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SSX4O60224 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.04□□□□□ -1.6
SSX4O60224 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
SSX4O60224 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SSX4O60224 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.03□□□□□ -1.6
SSX4O60224 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
SSX4O60224 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.03□□□□□ -1.6
SSX4O60224 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.03□□□□□ -1.6
SSX4O60224 RNU1-146P-201ENST00000364015 165 ntBASIC5.03□□□□□ -1.6
SSX4O60224 MIR143-201ENST00000385300 106 ntBASIC5.03□□□□□ -1.6
SSX4O60224 U3.28-201ENST00000391249 210 ntBASIC5.03□□□□□ -1.6
SSX4O60224 AC016739.1-201ENST00000405359 345 ntBASIC5.03□□□□□ -1.6
SSX4O60224 OR3A2-201ENST00000408891 1076 ntBASIC5.03□□□□□ -1.6
SSX4O60224 CTSL3P-202ENST00000412179 788 ntBASIC5.03□□□□□ -1.6
SSX4O60224 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SSX4O60224 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.03□□□□□ -1.6
SSX4O60224 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.03□□□□□ -1.6
SSX4O60224 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.03□□□□□ -1.6
SSX4O60224 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.03□□□□□ -1.6
SSX4O60224 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.03□□□□□ -1.6
SSX4O60224 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.03□□□□□ -1.6
SSX4O60224 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.03□□□□□ -1.6
SSX4O60224 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.03□□□□□ -1.6
SSX4O60224 AC006539.1-201ENST00000481419 501 ntBASIC5.03□□□□□ -1.6
SSX4O60224 MTND3P3-201ENST00000505004 126 ntBASIC5.03□□□□□ -1.6
SSX4O60224 ENPP7P11-201ENST00000505915 627 ntBASIC5.03□□□□□ -1.6
SSX4O60224 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC5.03□□□□□ -1.6
SSX4O60224 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.03□□□□□ -1.6
SSX4O60224 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.03□□□□□ -1.6
SSX4O60224 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.03□□□□□ -1.6
SSX4O60224 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.03□□□□□ -1.6
SSX4O60224 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.03□□□□□ -1.6
SSX4O60224 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.03□□□□□ -1.6
SSX4O60224 IGLV2-28-201ENST00000520681 304 ntBASIC5.03□□□□□ -1.6
SSX4O60224 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC5.03□□□□□ -1.6
SSX4O60224 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.03□□□□□ -1.6
SSX4O60224 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC5.03□□□□□ -1.6
SSX4O60224 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.03□□□□□ -1.6
SSX4O60224 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.03□□□□□ -1.6
SSX4O60224 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.03□□□□□ -1.6
SSX4O60224 AC106730.2-201ENST00000566641 540 ntBASIC5.03□□□□□ -1.6
SSX4O60224 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.03□□□□□ -1.6
SSX4O60224 AC015802.2-201ENST00000589690 189 ntBASIC5.03□□□□□ -1.6
SSX4O60224 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.03□□□□□ -1.6
SSX4O60224 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC5.03□□□□□ -1.6
SSX4O60224 AL589674.2-201ENST00000604304 337 ntBASIC5.03□□□□□ -1.6
SSX4O60224 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC5.03□□□□□ -1.6
SSX4O60224 AC092953.2-201ENST00000608000 699 ntBASIC5.03□□□□□ -1.6
SSX4O60224 AP000864.1-201ENST00000609424 650 ntBASIC5.03□□□□□ -1.6
SSX4O60224 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.03□□□□□ -1.6
SSX4O60224 AC090617.9-201ENST00000623751 147 ntBASIC5.03□□□□□ -1.6
SSX4O60224 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC5.03□□□□□ -1.6
SSX4O60224 AC079298.1-201ENST00000625026 1619 ntBASIC5.03□□□□□ -1.6
SSX4O60224 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
SSX4O60224 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SSX4O60224 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
SSX4O60224 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SSX4O60224 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SSX4O60224 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms