Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 CYP4F29P-201ENST00000420685 446 ntBASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 CHIAP3-201ENST00000423668 1133 ntBASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 FCF1P7-201ENST00000451185 558 ntBASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 KCTD9P6-201ENST00000522306 950 ntBASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 DERA-209ENST00000532964 854 ntTSL 5 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 GMFG-202ENST00000594700 397 ntTSL 2 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 AC107905.1-201ENST00000616204 426 ntBASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 MTCO1P22-201ENST00000604619 1360 ntBASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 RMST-209ENST00000639542 3269 ntTSL 5 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 SNORA70.9-201ENST00000384370 135 ntBASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 IL6-206ENST00000407492 926 ntTSL 3 BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 OR52Y1P-201ENST00000452418 828 ntBASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 AC009643.1-201ENST00000532030 391 ntBASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 AC093524.1-201ENST00000564266 1094 ntBASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 AC068724.3-201ENST00000625906 87 ntBASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC9.81□□□□□ -0.84
SHROOM4Q9ULL8 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 RNA5SP90-201ENST00000364801 99 ntBASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 NPM1P38-201ENST00000403835 865 ntBASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 EIF2S2P2-201ENST00000447161 982 ntBASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 RNA5SP43-201ENST00000516559 110 ntBASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 AL590392.1-201ENST00000604960 446 ntBASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 AC100871.1-201ENST00000507871 1456 ntBASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 AC010329.1-201ENST00000593903 8328 ntBASIC9.8□□□□□ -0.84
SHROOM4Q9ULL8 EEF1A1P36-201ENST00000427807 1351 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 SAMM50P1-201ENST00000455403 1399 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 MORF4L2P1-201ENST00000503761 858 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 OR4A17P-201ENST00000526032 904 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AC079064.1-201ENST00000528365 362 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AC084824.2-201ENST00000548906 345 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 USP8-204ENST00000425032 3559 ntTSL 2 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 RN7SKP185-201ENST00000362813 326 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AC069213.2-201ENST00000420238 366 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 BX323845.1-201ENST00000432417 179 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 HNRNPRP2-201ENST00000528421 743 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 RPL26P30-202ENST00000602923 645 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 AC092653.1-201ENST00000608509 531 ntBASIC9.79□□□□□ -0.84
SHROOM4Q9ULL8 DHX40P1-201ENST00000588725 1412 ntBASIC9.78□□□□□ -0.84
SHROOM4Q9ULL8 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
SHROOM4Q9ULL8 AL513548.1-201ENST00000562904 1724 ntBASIC9.78□□□□□ -0.84
SHROOM4Q9ULL8 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
SHROOM4Q9ULL8 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
SHROOM4Q9ULL8 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
SHROOM4Q9ULL8 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
SHROOM4Q9ULL8 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
SHROOM4Q9ULL8 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC9.78□□□□□ -0.84
SHROOM4Q9ULL8 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC9.78□□□□□ -0.84
SHROOM4Q9ULL8 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms