Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 RN7SKP171-201ENST00000364417 303 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 RPS24P12-201ENST00000402084 394 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 HMGN1P20-201ENST00000411849 300 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC013429.2-201ENST00000418798 781 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC234781.4-201ENST00000419384 244 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AL662874.1-201ENST00000426065 230 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AL139148.1-201ENST00000427122 680 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 RPS26P4-201ENST00000431743 355 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AL450263.2-201ENST00000439400 589 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 EEF1B2P3-201ENST00000447718 678 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC011476.1-201ENST00000466725 307 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 RPL7P40-201ENST00000481703 745 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 RPL9P15-201ENST00000491096 532 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC020890.1-201ENST00000491837 504 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC005412.2-201ENST00000492004 341 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AP001960.1-201ENST00000506494 658 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC147055.1-201ENST00000509261 750 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 RN7SKP99-201ENST00000517028 307 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 RPL23AP53-201ENST00000521854 457 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AGGF1P9-201ENST00000561884 913 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AL133268.1-201ENST00000405676 1401 ntBASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC28BQ9BUN5 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 NAMPTP1-201ENST00000440465 2514 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AC090181.3-201ENST00000624777 1514 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AC233289.1-201ENST00000403700 508 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 E2F6P2-201ENST00000420708 748 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 TRGV7-201ENST00000427089 353 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 Z84478.1-201ENST00000438230 1219 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AK6-204ENST00000512561 587 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 SNORD116-30-201ENST00000516468 85 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 HNRNPRP2-201ENST00000528421 743 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AC073575.2-201ENST00000614212 627 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AC009237.17-201ENST00000618111 748 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 FO681491.1-202ENST00000623392 737 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AC132068.1-201ENST00000623805 459 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AC007683.2-201ENST00000624681 714 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 MTCO1P22-201ENST00000604619 1360 ntBASIC5.04□□□□□ -1.6
CCDC28BQ9BUN5 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.03□□□□□ -1.6
CCDC28BQ9BUN5 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.03□□□□□ -1.6
CCDC28BQ9BUN5 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC28BQ9BUN5 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC28BQ9BUN5 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC28BQ9BUN5 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC28BQ9BUN5 RN7SKP104-201ENST00000362605 328 ntBASIC5.03□□□□□ -1.6
CCDC28BQ9BUN5 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms