Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 AL355488.2-201ENST00000609909 2850 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.23□□□□□ -1.57
CCDC3Q9BQI4 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC138907.8-201ENST00000623981 2256 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC023421.1-201ENST00000590535 1785 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 OR10AB1P-202ENST00000641219 1686 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 SNORA17.1-201ENST00000362945 126 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 RNA5SP443-201ENST00000363083 132 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 U3.28-201ENST00000391249 210 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 RPL37P18-201ENST00000411602 243 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 TRIM60P17-201ENST00000415181 719 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 RAB9AP4-201ENST00000415230 609 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 MTND6P5-201ENST00000448266 512 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 RAB28P3-201ENST00000448325 597 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC009963.4-201ENST00000448535 339 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 BX284632.1-201ENST00000478218 541 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC109464.1-201ENST00000511091 819 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 OR5D15P-201ENST00000531671 942 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AP004607.2-201ENST00000533949 322 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 OR1F2P-201ENST00000570470 933 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC095055.1-201ENST00000603472 1113 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC084036.1-201ENST00000609190 508 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AL049539.1-201ENST00000611964 459 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 MIR6798-201ENST00000612887 67 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC119674.1-220ENST00000641502 1048 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 LINC01739-205ENST00000641890 573 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 SCARNA15-201ENST00000607520 4325 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 AC068870.3-201ENST00000625077 2536 ntBASIC5.22□□□□□ -1.57
CCDC3Q9BQI4 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.21□□□□□ -1.57
CCDC3Q9BQI4 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AC079097.1-201ENST00000512187 1399 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AP005432.1-201ENST00000580891 3485 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 RNU6-618P-201ENST00000363518 112 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 RN7SKP216-201ENST00000411050 312 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 RN7SKP126-201ENST00000411143 300 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AL139128.1-201ENST00000413921 941 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AL138787.1-202ENST00000437804 898 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 GAPDHP25-201ENST00000447061 1001 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 RPS4XP20-201ENST00000505751 772 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms