Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC090888.3-201ENST00000558917 509 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 AC012213.4-201ENST00000606457 354 ntBASIC5.32□□□□□ -1.56
VPS39Q96JC1 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS39Q96JC1 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS39Q96JC1 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS39Q96JC1 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS39Q96JC1 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS39Q96JC1 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS39Q96JC1 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS39Q96JC1 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC132825.1-201ENST00000463573 2247 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AL450345.1-202ENST00000605741 3881 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 BMS1P3-201ENST00000372011 932 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 RPL21P67-201ENST00000402896 478 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AL358178.1-201ENST00000407698 397 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 MTND2P2-201ENST00000434633 945 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 RPS11P7-201ENST00000442125 465 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC073109.1-201ENST00000445066 978 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 GAPDHP25-201ENST00000447061 1001 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 NOP56P2-201ENST00000447491 769 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC243772.1-201ENST00000451620 410 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 RN7SL515P-201ENST00000463999 297 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 RN7SL51P-201ENST00000468230 285 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC058823.1-201ENST00000485315 474 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC090568.1-201ENST00000509499 856 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC106730.2-201ENST00000566641 540 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC015720.2-201ENST00000567709 334 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 MIR4505-201ENST00000582238 73 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 AP000919.1-201ENST00000582850 985 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC005252.1-201ENST00000604518 1063 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 AC019131.2-201ENST00000609071 870 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS39Q96JC1 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
VPS39Q96JC1 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.31□□□□□ -1.56
VPS39Q96JC1 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS39Q96JC1 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 PCAT14-202ENST00000627127 3935 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 RNA5SP319-201ENST00000362768 119 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 AC009302.1-201ENST00000417147 390 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 HMGN2P27-201ENST00000427352 270 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 MTND6P12-201ENST00000428247 522 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 AC079807.1-201ENST00000429993 481 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 RPL7P40-201ENST00000481703 745 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 AC093890.1-201ENST00000502554 540 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 MYL12BP2-201ENST00000503948 512 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 HAUS1P1-201ENST00000505275 832 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 144.9 ms