Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC7.1□□□□□ -1.27
MSH6P52701 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC7.1□□□□□ -1.27
MSH6P52701 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
MSH6P52701 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSH6P52701 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSH6P52701 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
MSH6P52701 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC7.09□□□□□ -1.27
MSH6P52701 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC7.09□□□□□ -1.27
MSH6P52701 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC7.09□□□□□ -1.27
MSH6P52701 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MSH6P52701 AC044797.1-201ENST00000445744 679 ntBASIC7.09□□□□□ -1.27
MSH6P52701 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC7.09□□□□□ -1.27
MSH6P52701 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
MSH6P52701 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MSH6P52701 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
MSH6P52701 AC010350.1-201ENST00000504908 231 ntBASIC7.09□□□□□ -1.27
MSH6P52701 GLUD1P3-202ENST00000508551 200 ntBASIC7.09□□□□□ -1.27
MSH6P52701 AC084824.1-201ENST00000550917 1005 ntBASIC7.09□□□□□ -1.27
MSH6P52701 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
MSH6P52701 AC020910.3-201ENST00000603701 874 ntBASIC7.09□□□□□ -1.27
MSH6P52701 AC244107.2-201ENST00000611773 76 ntBASIC7.09□□□□□ -1.27
MSH6P52701 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC7.09□□□□□ -1.27
MSH6P52701 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC7.09□□□□□ -1.27
MSH6P52701 MAPK10-270ENST00000641102 3538 ntBASIC7.09□□□□□ -1.27
MSH6P52701 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC7.09□□□□□ -1.27
MSH6P52701 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC7.09□□□□□ -1.27
MSH6P52701 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC7.09□□□□□ -1.27
MSH6P52701 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.28
MSH6P52701 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC7.09□□□□□ -1.28
MSH6P52701 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSH6P52701 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSH6P52701 RNU1-85P-201ENST00000364127 164 ntBASIC7.08□□□□□ -1.28
MSH6P52701 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC7.08□□□□□ -1.28
MSH6P52701 MIR129-1-201ENST00000384972 72 ntBASIC7.08□□□□□ -1.28
MSH6P52701 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
MSH6P52701 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC7.08□□□□□ -1.28
MSH6P52701 RPL23AP1-201ENST00000428990 471 ntBASIC7.08□□□□□ -1.28
MSH6P52701 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC7.08□□□□□ -1.28
MSH6P52701 AURKAPS2-201ENST00000454983 333 ntBASIC7.08□□□□□ -1.28
MSH6P52701 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC7.08□□□□□ -1.28
MSH6P52701 ENPP7P9-201ENST00000514456 627 ntBASIC7.08□□□□□ -1.28
MSH6P52701 GAPDHP62-201ENST00000515313 990 ntBASIC7.08□□□□□ -1.28
MSH6P52701 OR4A17P-201ENST00000526032 904 ntBASIC7.08□□□□□ -1.28
MSH6P52701 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC7.08□□□□□ -1.28
MSH6P52701 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSH6P52701 KPNA2P3-201ENST00000584190 848 ntBASIC7.08□□□□□ -1.28
MSH6P52701 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC7.08□□□□□ -1.28
MSH6P52701 MIR6716-201ENST00000613413 80 ntBASIC7.08□□□□□ -1.28
MSH6P52701 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC7.08□□□□□ -1.28
MSH6P52701 AC093297.3-201ENST00000607056 2517 ntBASIC7.08□□□□□ -1.28
MSH6P52701 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
MSH6P52701 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC7.08□□□□□ -1.28
MSH6P52701 AC099654.2-201ENST00000433031 1980 ntBASIC7.08□□□□□ -1.28
MSH6P52701 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC7.08□□□□□ -1.28
MSH6P52701 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSH6P52701 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC7.08□□□□□ -1.28
MSH6P52701 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSH6P52701 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC7.08□□□□□ -1.28
MSH6P52701 AL137100.1-201ENST00000556703 1620 ntBASIC7.08□□□□□ -1.28
MSH6P52701 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSH6P52701 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC7.08□□□□□ -1.28
MSH6P52701 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
MSH6P52701 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSH6P52701 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSH6P52701 SNORA70F-201ENST00000384142 135 ntBASIC7.08□□□□□ -1.28
MSH6P52701 RN7SKP106-201ENST00000410832 272 ntBASIC7.08□□□□□ -1.28
MSH6P52701 AF186996.5-201ENST00000418098 904 ntBASIC7.08□□□□□ -1.28
MSH6P52701 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC7.08□□□□□ -1.28
MSH6P52701 RPL12P34-201ENST00000424532 479 ntBASIC7.08□□□□□ -1.28
MSH6P52701 MRPS21P2-201ENST00000424704 264 ntBASIC7.08□□□□□ -1.28
MSH6P52701 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
MSH6P52701 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC7.08□□□□□ -1.28
MSH6P52701 AL161722.2-201ENST00000434731 981 ntBASIC7.08□□□□□ -1.28
MSH6P52701 TXNP5-201ENST00000441043 315 ntBASIC7.08□□□□□ -1.28
MSH6P52701 IGHV5-78-201ENST00000450948 295 ntBASIC7.08□□□□□ -1.28
MSH6P52701 CREM-230ENST00000474931 626 ntTSL 2 BASIC7.08□□□□□ -1.28
MSH6P52701 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC7.08□□□□□ -1.28
MSH6P52701 PPM1AP1-201ENST00000502740 1135 ntBASIC7.08□□□□□ -1.28
MSH6P52701 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC7.08□□□□□ -1.28
MSH6P52701 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC7.08□□□□□ -1.28
MSH6P52701 AC011944.2-201ENST00000624440 683 ntBASIC7.08□□□□□ -1.28
MSH6P52701 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC7.08□□□□□ -1.28
MSH6P52701 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC7.07□□□□□ -1.28
MSH6P52701 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSH6P52701 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
MSH6P52701 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSH6P52701 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSH6P52701 ASNSP1-204ENST00000641977 1664 ntBASIC7.07□□□□□ -1.28
MSH6P52701 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSH6P52701 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSH6P52701 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
MSH6P52701 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC7.07□□□□□ -1.28
MSH6P52701 OFD1P8Y-201ENST00000449148 1433 ntBASIC7.07□□□□□ -1.28
MSH6P52701 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC7.07□□□□□ -1.28
MSH6P52701 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
MSH6P52701 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
MSH6P52701 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC7.07□□□□□ -1.28
MSH6P52701 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC7.07□□□□□ -1.28
MSH6P52701 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
MSH6P52701 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms