Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
HOXC9P31274 BCORP1-203ENST00000513194 5093 ntBASIC6.68□□□□□ -1.34
HOXC9P31274 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC6.68□□□□□ -1.34
HOXC9P31274 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HOXC9P31274 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.68□□□□□ -1.34
HOXC9P31274 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
HOXC9P31274 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HOXC9P31274 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HOXC9P31274 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HOXC9P31274 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.67□□□□□ -1.34
HOXC9P31274 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC6.67□□□□□ -1.34
HOXC9P31274 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HOXC9P31274 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
HOXC9P31274 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.67□□□□□ -1.34
HOXC9P31274 SNORA70.10-201ENST00000384515 134 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 GLULP6-201ENST00000399502 913 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC6.67□□□□□ -1.34
HOXC9P31274 AC021876.1-201ENST00000425959 359 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 AC016712.1-201ENST00000431088 378 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC6.67□□□□□ -1.34
HOXC9P31274 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC6.67□□□□□ -1.34
HOXC9P31274 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.67□□□□□ -1.34
HOXC9P31274 AC005412.2-201ENST00000492004 341 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC6.67□□□□□ -1.34
HOXC9P31274 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC6.67□□□□□ -1.34
HOXC9P31274 AC021193.1-201ENST00000511607 420 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC6.67□□□□□ -1.34
HOXC9P31274 AC092709.1-201ENST00000521355 1045 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.67□□□□□ -1.34
HOXC9P31274 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
HOXC9P31274 AP001880.2-201ENST00000538233 448 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 AC084033.1-201ENST00000550830 633 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 AC104687.2-201ENST00000604442 342 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 AL023583.1-201ENST00000607518 1143 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC6.67□□□□□ -1.34
HOXC9P31274 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
HOXC9P31274 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
HOXC9P31274 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HOXC9P31274 Z98755.1-201ENST00000407015 1384 ntBASIC6.67□□□□□ -1.34
HOXC9P31274 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HOXC9P31274 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HOXC9P31274 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HOXC9P31274 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
HOXC9P31274 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.66□□□□□ -1.34
HOXC9P31274 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HOXC9P31274 ABCC13-202ENST00000463099 3842 ntBASIC6.66□□□□□ -1.34
HOXC9P31274 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
HOXC9P31274 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
HOXC9P31274 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HOXC9P31274 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
HOXC9P31274 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC6.66□□□□□ -1.34
HOXC9P31274 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.66□□□□□ -1.34
HOXC9P31274 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.66□□□□□ -1.34
HOXC9P31274 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC6.66□□□□□ -1.34
HOXC9P31274 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
HOXC9P31274 RNU6-775P-201ENST00000459318 96 ntBASIC6.66□□□□□ -1.34
HOXC9P31274 DAP3-209ENST00000465375 729 ntTSL 2 BASIC6.66□□□□□ -1.34
HOXC9P31274 RN7SL354P-201ENST00000469282 294 ntBASIC6.66□□□□□ -1.34
HOXC9P31274 RN7SL481P-201ENST00000477764 299 ntBASIC6.66□□□□□ -1.34
HOXC9P31274 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC6.66□□□□□ -1.34
HOXC9P31274 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.66□□□□□ -1.34
HOXC9P31274 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC6.66□□□□□ -1.34
HOXC9P31274 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC6.66□□□□□ -1.34
HOXC9P31274 OR7A8P-201ENST00000595427 913 ntBASIC6.66□□□□□ -1.34
HOXC9P31274 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.66□□□□□ -1.34
HOXC9P31274 AC108359.1-201ENST00000616451 1211 ntBASIC6.66□□□□□ -1.34
HOXC9P31274 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HOXC9P31274 ZNF652P1-201ENST00000442420 1309 ntBASIC6.66□□□□□ -1.34
HOXC9P31274 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.66□□□□□ -1.34
HOXC9P31274 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.66□□□□□ -1.34
HOXC9P31274 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
HOXC9P31274 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
HOXC9P31274 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HOXC9P31274 OR9K1P-202ENST00000641111 3217 ntBASIC6.66□□□□□ -1.34
HOXC9P31274 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
HOXC9P31274 DNM1P47-203ENST00000571780 12667 ntBASIC6.66□□□□□ -1.34
HOXC9P31274 OFD1P9Y-201ENST00000417699 1491 ntBASIC6.66□□□□□ -1.34
HOXC9P31274 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
HOXC9P31274 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
HOXC9P31274 ZNF812P-201ENST00000457674 1694 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.34
HOXC9P31274 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
HOXC9P31274 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HOXC9P31274 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HOXC9P31274 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXC9P31274 AC069213.2-201ENST00000420238 366 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 AC091390.1-201ENST00000433904 331 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 AL157385.1-201ENST00000446973 268 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 OR1H1P-201ENST00000448731 937 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 AC010733.1-201ENST00000451515 401 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 HMGB1P4-201ENST00000455362 567 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 RN7SL441P-201ENST00000492388 296 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.65□□□□□ -1.34
HOXC9P31274 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC6.65□□□□□ -1.34
HOXC9P31274 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC6.65□□□□□ -1.34
HOXC9P31274 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC6.65□□□□□ -1.34
HOXC9P31274 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC6.65□□□□□ -1.34
HOXC9P31274 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC6.65□□□□□ -1.34
HOXC9P31274 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC6.65□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms