Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.32□□□□□ -1.56
MSH3P20585 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
MSH3P20585 RNA5SP230-201ENST00000517039 122 ntBASIC5.32□□□□□ -1.56
MSH3P20585 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.32□□□□□ -1.56
MSH3P20585 NMNAT1P5-201ENST00000559657 841 ntBASIC5.32□□□□□ -1.56
MSH3P20585 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.32□□□□□ -1.56
MSH3P20585 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSH3P20585 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.32□□□□□ -1.56
MSH3P20585 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.32□□□□□ -1.56
MSH3P20585 AP000864.1-201ENST00000609424 650 ntBASIC5.32□□□□□ -1.56
MSH3P20585 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.32□□□□□ -1.56
MSH3P20585 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.32□□□□□ -1.56
MSH3P20585 AL138960.2-201ENST00000625145 535 ntBASIC5.32□□□□□ -1.56
MSH3P20585 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.32□□□□□ -1.56
MSH3P20585 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.32□□□□□ -1.56
MSH3P20585 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.32□□□□□ -1.56
MSH3P20585 AC112198.2-201ENST00000426589 6996 ntBASIC5.32□□□□□ -1.56
MSH3P20585 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.32□□□□□ -1.56
MSH3P20585 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
MSH3P20585 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSH3P20585 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.32□□□□□ -1.56
MSH3P20585 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSH3P20585 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSH3P20585 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
MSH3P20585 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.31□□□□□ -1.56
MSH3P20585 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.31□□□□□ -1.56
MSH3P20585 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSH3P20585 AC003973.3-201ENST00000624863 2822 ntBASIC5.31□□□□□ -1.56
MSH3P20585 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.31□□□□□ -1.56
MSH3P20585 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.31□□□□□ -1.56
MSH3P20585 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
MSH3P20585 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.31□□□□□ -1.56
MSH3P20585 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
MSH3P20585 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSH3P20585 AC007068.1-201ENST00000396690 844 ntBASIC5.31□□□□□ -1.56
MSH3P20585 OR1F12-201ENST00000402365 945 ntBASIC5.31□□□□□ -1.56
MSH3P20585 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
MSH3P20585 AL512504.1-201ENST00000415494 778 ntBASIC5.31□□□□□ -1.56
MSH3P20585 AC017019.1-201ENST00000426129 261 ntBASIC5.31□□□□□ -1.56
MSH3P20585 HSPD1P12-201ENST00000429127 1069 ntBASIC5.31□□□□□ -1.56
MSH3P20585 RPL7L1P9-201ENST00000431298 745 ntBASIC5.31□□□□□ -1.56
MSH3P20585 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.31□□□□□ -1.56
MSH3P20585 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC5.31□□□□□ -1.56
MSH3P20585 RPS15AP29-201ENST00000445539 400 ntBASIC5.31□□□□□ -1.56
MSH3P20585 RPS24P16-201ENST00000497294 392 ntBASIC5.31□□□□□ -1.56
MSH3P20585 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.31□□□□□ -1.56
MSH3P20585 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.31□□□□□ -1.56
MSH3P20585 HMGN1P9-201ENST00000515212 298 ntBASIC5.31□□□□□ -1.56
MSH3P20585 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.31□□□□□ -1.56
MSH3P20585 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
MSH3P20585 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.31□□□□□ -1.56
MSH3P20585 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.31□□□□□ -1.56
MSH3P20585 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.31□□□□□ -1.56
MSH3P20585 MIR4660-201ENST00000583549 74 ntBASIC5.31□□□□□ -1.56
MSH3P20585 FKBP1AP1-201ENST00000594588 318 ntBASIC5.31□□□□□ -1.56
MSH3P20585 VN1R81P-201ENST00000602085 372 ntBASIC5.31□□□□□ -1.56
MSH3P20585 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.31□□□□□ -1.56
MSH3P20585 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.31□□□□□ -1.56
MSH3P20585 RNU6-84P-201ENST00000607737 102 ntBASIC5.31□□□□□ -1.56
MSH3P20585 AC244107.2-201ENST00000611773 76 ntBASIC5.31□□□□□ -1.56
MSH3P20585 CASC19-264ENST00000641912 1184 ntBASIC5.31□□□□□ -1.56
MSH3P20585 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
MSH3P20585 AL078621.3-201ENST00000623707 2042 ntBASIC5.31□□□□□ -1.56
MSH3P20585 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSH3P20585 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSH3P20585 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.31□□□□□ -1.56
MSH3P20585 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSH3P20585 AC003985.2-201ENST00000562268 1669 ntBASIC5.31□□□□□ -1.56
MSH3P20585 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSH3P20585 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSH3P20585 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSH3P20585 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSH3P20585 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSH3P20585 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
MSH3P20585 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.3□□□□□ -1.56
MSH3P20585 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
MSH3P20585 AC008079.2-201ENST00000623543 20396 ntBASIC5.3□□□□□ -1.56
MSH3P20585 AC092376.2-201ENST00000622621 4116 ntBASIC5.3□□□□□ -1.56
MSH3P20585 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
MSH3P20585 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
MSH3P20585 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.3□□□□□ -1.56
MSH3P20585 Y_RNA.110-201ENST00000363220 99 ntBASIC5.3□□□□□ -1.56
MSH3P20585 SNORA51.1-201ENST00000363243 140 ntBASIC5.3□□□□□ -1.56
MSH3P20585 MIR105-1-201ENST00000385222 81 ntBASIC5.3□□□□□ -1.56
MSH3P20585 RNU1-149P-201ENST00000390870 161 ntBASIC5.3□□□□□ -1.56
MSH3P20585 AL391361.1-201ENST00000405580 489 ntBASIC5.3□□□□□ -1.56
MSH3P20585 AL358178.1-201ENST00000407698 397 ntBASIC5.3□□□□□ -1.56
MSH3P20585 AL445213.1-201ENST00000412589 747 ntBASIC5.3□□□□□ -1.56
MSH3P20585 HYALP1-201ENST00000417674 1279 ntBASIC5.3□□□□□ -1.56
MSH3P20585 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.3□□□□□ -1.56
MSH3P20585 AJ239321.1-201ENST00000424255 564 ntBASIC5.3□□□□□ -1.56
MSH3P20585 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC5.3□□□□□ -1.56
MSH3P20585 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.3□□□□□ -1.56
MSH3P20585 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC5.3□□□□□ -1.56
MSH3P20585 OR2AF1P-201ENST00000454899 889 ntBASIC5.3□□□□□ -1.56
MSH3P20585 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
MSH3P20585 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.3□□□□□ -1.56
MSH3P20585 RN7SL423P-201ENST00000486202 304 ntBASIC5.3□□□□□ -1.56
MSH3P20585 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.3□□□□□ -1.56
MSH3P20585 CDC42P3-201ENST00000518493 633 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms