Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.64□□□□□ -1.35
COL3A1P02461 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL3A1P02461 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC6.64□□□□□ -1.35
COL3A1P02461 OR5AQ1P-202ENST00000641257 1534 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 OR5AQ1P-203ENST00000641818 1529 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 ECM1P2-201ENST00000503354 1577 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL3A1P02461 TTC41P-205ENST00000551270 3963 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC6.63□□□□□ -1.35
COL3A1P02461 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL3A1P02461 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL3A1P02461 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL3A1P02461 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL3A1P02461 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
COL3A1P02461 CCL7-202ENST00000394627 696 ntTSL 3 BASIC6.63□□□□□ -1.35
COL3A1P02461 AC007559.1-201ENST00000428736 355 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 TEX41-205ENST00000431734 529 ntTSL 4 BASIC6.63□□□□□ -1.35
COL3A1P02461 CYCSP11-201ENST00000436426 315 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 TXNP5-201ENST00000441043 315 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 RPL5P25-201ENST00000441148 775 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 AC112498.1-201ENST00000444401 332 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 AC098826.2-201ENST00000452011 651 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC6.63□□□□□ -1.35
COL3A1P02461 RPL23AP56-201ENST00000460778 453 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 AC021660.1-201ENST00000465006 554 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 OR52A4P-202ENST00000481634 799 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 OR52A4P-203ENST00000498233 1014 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.63□□□□□ -1.35
COL3A1P02461 OR7H2P-201ENST00000513483 306 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 RN7SKP157-201ENST00000516174 282 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 RNU6-551P-201ENST00000516661 103 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.63□□□□□ -1.35
COL3A1P02461 HIGD1AP5-201ENST00000529959 259 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC6.63□□□□□ -1.35
COL3A1P02461 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC6.63□□□□□ -1.35
COL3A1P02461 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC6.63□□□□□ -1.35
COL3A1P02461 EIF3FP1-201ENST00000613970 806 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC6.63□□□□□ -1.35
COL3A1P02461 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL3A1P02461 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC6.63□□□□□ -1.35
COL3A1P02461 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.63□□□□□ -1.35
COL3A1P02461 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL3A1P02461 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL3A1P02461 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL3A1P02461 BX284613.1-201ENST00000452221 1641 ntBASIC6.63□□□□□ -1.35
COL3A1P02461 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL3A1P02461 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.62□□□□□ -1.35
COL3A1P02461 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.62□□□□□ -1.35
COL3A1P02461 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.62□□□□□ -1.35
COL3A1P02461 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL3A1P02461 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.62□□□□□ -1.35
COL3A1P02461 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
COL3A1P02461 AC013442.1-201ENST00000397347 228 ntBASIC6.62□□□□□ -1.35
COL3A1P02461 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL3A1P02461 SNORA11-201ENST00000408789 128 ntBASIC6.62□□□□□ -1.35
COL3A1P02461 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC6.62□□□□□ -1.35
COL3A1P02461 AC117434.1-201ENST00000419971 836 ntBASIC6.62□□□□□ -1.35
COL3A1P02461 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
COL3A1P02461 AC091180.1-201ENST00000462104 372 ntBASIC6.62□□□□□ -1.35
COL3A1P02461 FTH1P2-201ENST00000466086 412 ntBASIC6.62□□□□□ -1.35
COL3A1P02461 ENPP7P11-201ENST00000505915 627 ntBASIC6.62□□□□□ -1.35
COL3A1P02461 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.62□□□□□ -1.35
COL3A1P02461 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC6.62□□□□□ -1.35
COL3A1P02461 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC6.62□□□□□ -1.35
COL3A1P02461 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.62□□□□□ -1.35
COL3A1P02461 AC005000.1-201ENST00000536192 288 ntBASIC6.62□□□□□ -1.35
COL3A1P02461 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.62□□□□□ -1.35
COL3A1P02461 PYM1-205ENST00000547925 499 ntTSL 3 BASIC6.62□□□□□ -1.35
COL3A1P02461 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC6.62□□□□□ -1.35
COL3A1P02461 ADAD1P2-201ENST00000588476 646 ntBASIC6.62□□□□□ -1.35
COL3A1P02461 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL3A1P02461 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL3A1P02461 MR1-209ENST00000617803 7584 ntTSL 5 BASIC6.62□□□□□ -1.35
COL3A1P02461 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
COL3A1P02461 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.62□□□□□ -1.35
COL3A1P02461 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC6.62□□□□□ -1.35
COL3A1P02461 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL3A1P02461 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL3A1P02461 SNORA73.1-201ENST00000363107 205 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL3A1P02461 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL3A1P02461 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL3A1P02461 AC063976.2-201ENST00000425667 3556 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.61□□□□□ -1.35
COL3A1P02461 COX6CP13-201ENST00000428703 226 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 MTND1P26-201ENST00000440488 538 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC6.61□□□□□ -1.35
COL3A1P02461 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC6.61□□□□□ -1.35
COL3A1P02461 AURKAPS2-201ENST00000454983 333 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC6.61□□□□□ -1.35
COL3A1P02461 AC116562.1-201ENST00000485355 781 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 SCARNA22-201ENST00000503991 125 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC6.61□□□□□ -1.35
COL3A1P02461 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.61□□□□□ -1.35
COL3A1P02461 AC026688.1-201ENST00000520639 1168 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL3A1P02461 RGS5-219ENST00000528019 512 ntTSL 4 BASIC6.61□□□□□ -1.35
COL3A1P02461 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC6.61□□□□□ -1.35
COL3A1P02461 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms