Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CCDC39Q9UFE4 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 TOPORSLP1-201ENST00000467693 2102 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 BX005019.1-201ENST00000561881 1810 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 Y_RNA.303-201ENST00000364998 94 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 Y_RNA.408-201ENST00000383987 102 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 DNAJA1P3-201ENST00000399417 1194 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 MOB4-205ENST00000409916 829 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 UBTFL2-201ENST00000411859 1191 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AC015977.1-201ENST00000418887 292 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 MGAT2P2-201ENST00000427194 797 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AL365220.1-201ENST00000432923 399 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 PPIAP32-201ENST00000449940 472 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 Z83838.1-202ENST00000456225 839 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 BZW1P2-201ENST00000473537 826 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 RPL9P33-201ENST00000484311 566 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 MTND5P5-201ENST00000503764 376 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AC018645.1-201ENST00000505003 109 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AL133399.1-201ENST00000527476 298 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AC092851.1-201ENST00000535964 478 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 NBEAP1-201ENST00000554452 979 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 NPM1P42-201ENST00000560329 862 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 DUXAP11-201ENST00000603858 526 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AL008723.3-201ENST00000608926 449 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AL008582.1-201ENST00000609612 442 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 AL359955.1-201ENST00000455242 3275 ntBASIC7.18□□□□□ -1.26
CCDC39Q9UFE4 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 RNU4-92P-201ENST00000363783 136 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 ARL2BPP3-201ENST00000421226 480 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AC246680.2-201ENST00000422106 389 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AC244035.1-201ENST00000430042 390 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AP000936.2-201ENST00000447151 681 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AL589880.1-201ENST00000448271 287 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 VPS25P1-201ENST00000455691 508 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 MTCO3P38-201ENST00000468910 766 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 OR9A1P-202ENST00000484361 945 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 RPS12P31-201ENST00000491419 398 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 RN7SL284P-201ENST00000498823 275 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 OR5H5P-201ENST00000503164 928 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AC093664.1-201ENST00000511779 289 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms