Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 HYALP1-201ENST00000417674 1279 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 DDX39BP1-205ENST00000422507 192 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 HMGB1P32-201ENST00000425971 565 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 RPL5P2-201ENST00000429598 854 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC009238.2-201ENST00000431026 355 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC046176.1-201ENST00000435260 1170 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 RHOT1P3-201ENST00000436571 331 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC092490.3-201ENST00000545370 572 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AL049874.4-201ENST00000557593 255 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 MIR4433B-201ENST00000581329 102 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC009303.3-201ENST00000591103 736 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 OR7M1P-201ENST00000608946 533 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC009163.6-201ENST00000612367 342 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AL627230.1-201ENST00000613077 211 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AL591926.8-201ENST00000616876 211 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC018628.1-201ENST00000624147 3819 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 SNORA70-201ENST00000384436 135 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 RPL34P20-201ENST00000442771 351 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 KNOP1P3-201ENST00000446933 426 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC009963.4-201ENST00000448535 339 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC073850.1-201ENST00000449243 255 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC109462.1-201ENST00000491087 368 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC004980.4-201ENST00000513375 203 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC044860.2-201ENST00000561005 179 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 PRPF19P1-201ENST00000584766 898 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC108359.1-201ENST00000616451 1211 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AC004158.1-201ENST00000564508 4319 ntBASIC5.19□□□□□ -1.58
LHX3Q9UBR4 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.19□□□□□ -1.58
LHX3Q9UBR4 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 SMG1P7-201ENST00000565246 2704 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 THAP12P4-201ENST00000528321 2266 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC007342.9-201ENST00000623877 1385 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AP000432.2-201ENST00000624164 2048 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms