Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC006463.2-201ENST00000473326 348 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC007686.1-201ENST00000488511 463 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC147055.1-201ENST00000509261 750 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 RNU6-941P-201ENST00000516346 108 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC060780.2-201ENST00000589047 198 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 ELOCP28-201ENST00000590044 317 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AC109583.2-201ENST00000617367 129 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AL590410.1-201ENST00000617925 333 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AL445528.2-201ENST00000620582 470 ntBASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDDC3Q8N4P3 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
HDDC3Q8N4P3 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
HDDC3Q8N4P3 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.46□□□□□ -1.53
HDDC3Q8N4P3 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
HDDC3Q8N4P3 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.46□□□□□ -1.53
HDDC3Q8N4P3 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
HDDC3Q8N4P3 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
HDDC3Q8N4P3 AC010132.2-201ENST00000295493 1043 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 RNU1-43P-201ENST00000365052 165 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 RNU1-149P-201ENST00000390870 161 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 OR10T1P-201ENST00000424327 947 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 MTND4LP13-201ENST00000425022 298 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AL672138.1-201ENST00000450604 1015 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AL035090.1-201ENST00000454835 332 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 SEPT14P1-201ENST00000458703 648 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AC093890.1-201ENST00000502554 540 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AK4P6-201ENST00000505168 528 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 ST13P12-201ENST00000508958 1094 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AC109635.6-201ENST00000525487 1113 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AC122688.1-201ENST00000541494 223 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 PCNPP1-201ENST00000552501 511 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AC011840.5-201ENST00000582125 771 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AC107905.1-201ENST00000616204 426 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AL353662.3-201ENST00000625131 237 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 AC097461.1-201ENST00000568928 2821 ntBASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.46□□□□□ -1.54
HDDC3Q8N4P3 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AC114947.2-201ENST00000565748 2125 ntBASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 RNU1-106P-201ENST00000384382 164 ntBASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 RIMKLBP2-201ENST00000424737 654 ntBASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 HMGB1P32-201ENST00000425971 565 ntBASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 RPL7P56-201ENST00000429441 717 ntBASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 IGBP1P3-201ENST00000447449 1000 ntBASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 DNAJB5P1-201ENST00000454004 806 ntBASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 RPL7AP10-201ENST00000481016 791 ntBASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AC083982.1-201ENST00000485679 344 ntBASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HDDC3Q8N4P3 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms