Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PABPC1P9-201ENST00000426076 1612 ntBASIC6.3□□□□□ -1.4
RNF4P78317 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
RNF4P78317 FGF7P2-201ENST00000332473 296 ntBASIC6.3□□□□□ -1.4
RNF4P78317 RNU6-666P-201ENST00000363499 107 ntBASIC6.3□□□□□ -1.4
RNF4P78317 Y_RNA.302-201ENST00000364997 102 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AC092634.1-201ENST00000366505 199 ntBASIC6.3□□□□□ -1.4
RNF4P78317 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 RNU6-348P-201ENST00000384386 107 ntBASIC6.3□□□□□ -1.4
RNF4P78317 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC6.3□□□□□ -1.4
RNF4P78317 SNORA11C-201ENST00000408532 129 ntBASIC6.3□□□□□ -1.4
RNF4P78317 RPL23AP39-201ENST00000415533 405 ntBASIC6.3□□□□□ -1.4
RNF4P78317 GAPDHP49-201ENST00000421421 961 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AP003385.1-201ENST00000426387 893 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC6.3□□□□□ -1.4
RNF4P78317 AC083855.1-201ENST00000440041 258 ntBASIC6.3□□□□□ -1.4
RNF4P78317 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.3□□□□□ -1.4
RNF4P78317 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC6.3□□□□□ -1.4
RNF4P78317 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC6.3□□□□□ -1.4
RNF4P78317 PNPLA4P1-201ENST00000458328 305 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AC021205.1-201ENST00000468797 348 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC6.3□□□□□ -1.4
RNF4P78317 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.3□□□□□ -1.4
RNF4P78317 RPS4XP17-201ENST00000479057 754 ntBASIC6.3□□□□□ -1.4
RNF4P78317 RN7SL382P-201ENST00000482631 282 ntBASIC6.3□□□□□ -1.4
RNF4P78317 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC6.3□□□□□ -1.4
RNF4P78317 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC6.3□□□□□ -1.4
RNF4P78317 RPS4XP15-201ENST00000489210 795 ntBASIC6.3□□□□□ -1.4
RNF4P78317 RPL23AP80-201ENST00000495605 424 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC6.3□□□□□ -1.4
RNF4P78317 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC6.3□□□□□ -1.4
RNF4P78317 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC6.3□□□□□ -1.4
RNF4P78317 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC6.3□□□□□ -1.4
RNF4P78317 TCP11X3P-202ENST00000514289 1254 ntBASIC6.3□□□□□ -1.4
RNF4P78317 MINOS1P4-201ENST00000515470 318 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC6.3□□□□□ -1.4
RNF4P78317 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
RNF4P78317 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.3□□□□□ -1.4
RNF4P78317 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.3□□□□□ -1.4
RNF4P78317 AL591767.3-201ENST00000554632 525 ntBASIC6.3□□□□□ -1.4
RNF4P78317 CHEK2P2-201ENST00000554701 672 ntBASIC6.3□□□□□ -1.4
RNF4P78317 FXNP1-201ENST00000555153 337 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC6.3□□□□□ -1.4
RNF4P78317 AC009063.1-201ENST00000563342 702 ntBASIC6.3□□□□□ -1.4
RNF4P78317 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC6.3□□□□□ -1.4
RNF4P78317 SNORA70D-201ENST00000578836 135 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC6.3□□□□□ -1.4
RNF4P78317 RPS11-205ENST00000599561 430 ntTSL 5 BASIC6.3□□□□□ -1.4
RNF4P78317 AP002360.3-201ENST00000607673 710 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AL445670.1-201ENST00000618889 801 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC6.3□□□□□ -1.4
RNF4P78317 TSHZ2-205ENST00000626626 670 ntBASIC6.3□□□□□ -1.4
RNF4P78317 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.3□□□□□ -1.4
RNF4P78317 TTC41P-205ENST00000551270 3963 ntBASIC6.3□□□□□ -1.4
RNF4P78317 AL079343.1-201ENST00000572358 1771 ntBASIC6.3□□□□□ -1.4
RNF4P78317 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.3□□□□□ -1.4
RNF4P78317 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
RNF4P78317 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
RNF4P78317 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
RNF4P78317 UBBP1-201ENST00000392399 473 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AL161909.1-201ENST00000397390 712 ntBASIC6.29□□□□□ -1.4
RNF4P78317 BTF3P7-201ENST00000407097 488 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AL353133.1-201ENST00000407695 401 ntBASIC6.29□□□□□ -1.4
RNF4P78317 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC6.29□□□□□ -1.4
RNF4P78317 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
RNF4P78317 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.29□□□□□ -1.4
RNF4P78317 MTCO2P19-201ENST00000427513 598 ntBASIC6.29□□□□□ -1.4
RNF4P78317 RPL31P54-201ENST00000429803 370 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC6.29□□□□□ -1.4
RNF4P78317 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.29□□□□□ -1.4
RNF4P78317 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC6.29□□□□□ -1.4
RNF4P78317 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC6.29□□□□□ -1.4
RNF4P78317 UBE2V1P8-201ENST00000437166 265 ntBASIC6.29□□□□□ -1.4
RNF4P78317 AC122718.1-201ENST00000439448 744 ntBASIC6.29□□□□□ -1.4
RNF4P78317 GAPDHP20-201ENST00000444107 1007 ntBASIC6.29□□□□□ -1.4
RNF4P78317 NANOGNBP1-201ENST00000448444 480 ntBASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 151.4 ms