Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
FOXA1P55317 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
FOXA1P55317 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
FOXA1P55317 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
FOXA1P55317 AC005522.1-201ENST00000395416 346 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
FOXA1P55317 RN7SKP126-201ENST00000411143 300 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.83□□□□□ -1.64
FOXA1P55317 TMBIM7P-201ENST00000418074 855 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
FOXA1P55317 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.83□□□□□ -1.64
FOXA1P55317 SCAND3P1-201ENST00000439854 1060 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 SPRYD7P1-201ENST00000443861 570 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
FOXA1P55317 IGHV5-78-201ENST00000450948 295 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 SETP20-201ENST00000457046 852 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 SSX6-203ENST00000509958 336 ntTSL 3 BASIC4.83□□□□□ -1.64
FOXA1P55317 NPM1P21-201ENST00000513394 762 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 RNA5SP249-201ENST00000516127 99 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 AC026688.1-201ENST00000520639 1168 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 AP002373.2-201ENST00000541631 1060 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC4.83□□□□□ -1.64
FOXA1P55317 RN7SL753P-201ENST00000581238 290 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 RN7SL435P-201ENST00000584418 282 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 AP002505.2-201ENST00000623585 696 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.83□□□□□ -1.64
FOXA1P55317 METTL15-211ENST00000634762 718 ntTSL 5 BASIC4.83□□□□□ -1.64
FOXA1P55317 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
FOXA1P55317 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.83□□□□□ -1.64
FOXA1P55317 AC007996.1-201ENST00000620414 2821 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
FOXA1P55317 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
FOXA1P55317 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
FOXA1P55317 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
FOXA1P55317 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.83□□□□□ -1.64
FOXA1P55317 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
FOXA1P55317 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
FOXA1P55317 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.82□□□□□ -1.64
FOXA1P55317 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.82□□□□□ -1.64
FOXA1P55317 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
FOXA1P55317 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
FOXA1P55317 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
FOXA1P55317 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
FOXA1P55317 SNORA17.1-201ENST00000362945 126 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 SNORA73.1-201ENST00000363107 205 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
FOXA1P55317 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
FOXA1P55317 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
FOXA1P55317 OR3A2-201ENST00000408891 1076 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 RPL36AP10-201ENST00000421785 322 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 MGAT2P2-201ENST00000427194 797 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 RPS26P4-201ENST00000431743 355 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 RPL34P20-201ENST00000442771 351 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 TPT1P1-201ENST00000458495 518 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.82□□□□□ -1.64
FOXA1P55317 AL136038.1-201ENST00000497246 351 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 AC024558.1-201ENST00000505008 528 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
FOXA1P55317 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.82□□□□□ -1.64
FOXA1P55317 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.82□□□□□ -1.64
FOXA1P55317 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.82□□□□□ -1.64
FOXA1P55317 AL049779.2-201ENST00000553847 315 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.82□□□□□ -1.64
FOXA1P55317 MIR3936-201ENST00000584304 110 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 AC010487.1-201ENST00000594408 1172 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.82□□□□□ -1.64
FOXA1P55317 AC105254.2-201ENST00000603636 436 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 AC104687.2-201ENST00000604442 342 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 MIR6837-201ENST00000620884 64 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 AC015871.5-202ENST00000623252 701 ntBASIC4.82□□□□□ -1.64
FOXA1P55317 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
FOXA1P55317 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
FOXA1P55317 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.82□□□□□ -1.64
FOXA1P55317 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.82□□□□□ -1.64
FOXA1P55317 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.82□□□□□ -1.64
FOXA1P55317 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
FOXA1P55317 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
FOXA1P55317 AC006484.1-201ENST00000435086 1884 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC4.81□□□□□ -1.64
FOXA1P55317 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.81□□□□□ -1.64
FOXA1P55317 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
FOXA1P55317 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
FOXA1P55317 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
FOXA1P55317 RN7SKP160-201ENST00000363804 340 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 RNA5SP435-201ENST00000364044 108 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
FOXA1P55317 UBBP2-201ENST00000376781 231 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
FOXA1P55317 SLC35E1P1-201ENST00000419313 864 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC4.81□□□□□ -1.64
FOXA1P55317 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.81□□□□□ -1.64
FOXA1P55317 RHEBP2-201ENST00000450289 600 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 OR2AF1P-201ENST00000454899 889 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 GYG1P1-201ENST00000460864 698 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 AC018638.3-201ENST00000461273 132 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
FOXA1P55317 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
FOXA1P55317 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.81□□□□□ -1.64
FOXA1P55317 AC016839.1-201ENST00000578162 867 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms