Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC6.44□□□□□ -1.38
SMARCA1P28370 AC106872.4-201ENST00000510050 523 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC6.44□□□□□ -1.38
SMARCA1P28370 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC6.44□□□□□ -1.38
SMARCA1P28370 AC004923.2-201ENST00000529649 369 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC6.44□□□□□ -1.38
SMARCA1P28370 GLRXP2-201ENST00000555594 321 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 AL049838.1-201ENST00000563647 981 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.44□□□□□ -1.38
SMARCA1P28370 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC6.44□□□□□ -1.38
SMARCA1P28370 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.44□□□□□ -1.38
SMARCA1P28370 AC015849.2-201ENST00000605738 409 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC6.44□□□□□ -1.38
SMARCA1P28370 AP003476.1-201ENST00000623984 516 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC6.44□□□□□ -1.38
SMARCA1P28370 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC6.44□□□□□ -1.38
SMARCA1P28370 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
SMARCA1P28370 AC093671.1-201ENST00000624981 2929 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC6.44□□□□□ -1.38
SMARCA1P28370 AC106754.1-201ENST00000562632 1513 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
SMARCA1P28370 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
SMARCA1P28370 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC6.43□□□□□ -1.38
SMARCA1P28370 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.43□□□□□ -1.38
SMARCA1P28370 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC6.43□□□□□ -1.38
SMARCA1P28370 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.43□□□□□ -1.38
SMARCA1P28370 MSL3P1-202ENST00000440028 1468 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC6.43□□□□□ -1.38
SMARCA1P28370 RN7SKP28-201ENST00000364770 305 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6.43□□□□□ -1.38
SMARCA1P28370 PTP4A1P1-201ENST00000420539 515 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC6.43□□□□□ -1.38
SMARCA1P28370 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC6.43□□□□□ -1.38
SMARCA1P28370 AL390119.1-201ENST00000440329 312 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC6.43□□□□□ -1.38
SMARCA1P28370 AL096829.2-201ENST00000446582 742 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 AL157884.3-201ENST00000448273 1184 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 PPIAP20-201ENST00000449839 135 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC6.43□□□□□ -1.38
SMARCA1P28370 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC6.43□□□□□ -1.38
SMARCA1P28370 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC6.43□□□□□ -1.38
SMARCA1P28370 PRELID3BP6-201ENST00000503839 571 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 AC121161.1-201ENST00000510606 652 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC6.43□□□□□ -1.38
SMARCA1P28370 CIR1P1-201ENST00000524055 1133 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC6.43□□□□□ -1.38
SMARCA1P28370 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC6.43□□□□□ -1.38
SMARCA1P28370 C1GALT1P1-201ENST00000548895 1089 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC6.43□□□□□ -1.38
SMARCA1P28370 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC6.43□□□□□ -1.38
SMARCA1P28370 AC090666.1-201ENST00000578241 445 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC6.43□□□□□ -1.38
SMARCA1P28370 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.43□□□□□ -1.38
SMARCA1P28370 AC009237.13-201ENST00000603193 276 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 MTCO3P22-201ENST00000603219 784 ntBASIC6.43□□□□□ -1.38
SMARCA1P28370 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC6.43□□□□□ -1.38
SMARCA1P28370 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.43□□□□□ -1.38
SMARCA1P28370 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SMARCA1P28370 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
SMARCA1P28370 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.43□□□□□ -1.38
SMARCA1P28370 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.43□□□□□ -1.38
SMARCA1P28370 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SMARCA1P28370 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.42□□□□□ -1.38
SMARCA1P28370 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
SMARCA1P28370 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 ZSCAN12P1-201ENST00000406489 419 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC6.42□□□□□ -1.38
SMARCA1P28370 LINC02210-201ENST00000444561 288 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC6.42□□□□□ -1.38
SMARCA1P28370 OR2AF1P-201ENST00000454899 889 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC6.42□□□□□ -1.38
SMARCA1P28370 RNU5A-7P-201ENST00000515979 116 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC6.42□□□□□ -1.38
SMARCA1P28370 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 OR4A17P-201ENST00000526032 904 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC6.42□□□□□ -1.38
SMARCA1P28370 AP003066.2-201ENST00000529375 555 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 OR5AM1P-201ENST00000532136 1032 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 DUX4L52-201ENST00000549363 777 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC6.42□□□□□ -1.38
SMARCA1P28370 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC6.42□□□□□ -1.38
SMARCA1P28370 AC025857.2-201ENST00000602711 238 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 MIR6768-201ENST00000610734 72 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 AL118522.2-201ENST00000616045 615 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 AC007275.1-201ENST00000621243 671 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 AC019080.5-201ENST00000624891 757 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 NEK3-211ENST00000629912 141 ntTSL 5 BASIC6.42□□□□□ -1.38
SMARCA1P28370 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms