Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC090424.1-201ENST00000535243 736 ntBASIC7□□□□□ -1.29
HMGB1P09429 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC7□□□□□ -1.29
HMGB1P09429 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC7□□□□□ -1.29
HMGB1P09429 AC015911.5-201ENST00000587076 451 ntBASIC7□□□□□ -1.29
HMGB1P09429 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC7□□□□□ -1.29
HMGB1P09429 AC084824.5-201ENST00000612009 413 ntBASIC7□□□□□ -1.29
HMGB1P09429 MIR6889-201ENST00000613185 59 ntBASIC7□□□□□ -1.29
HMGB1P09429 AC006213.5-201ENST00000619673 288 ntBASIC7□□□□□ -1.29
HMGB1P09429 AL136228.1-201ENST00000622221 319 ntBASIC7□□□□□ -1.29
HMGB1P09429 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC7□□□□□ -1.29
HMGB1P09429 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC7□□□□□ -1.29
HMGB1P09429 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC7□□□□□ -1.29
HMGB1P09429 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
HMGB1P09429 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
HMGB1P09429 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC7□□□□□ -1.29
HMGB1P09429 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
HMGB1P09429 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC7□□□□□ -1.29
HMGB1P09429 MFSD8-213ENST00000641134 1327 ntBASIC7□□□□□ -1.29
HMGB1P09429 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 SEC63P2-201ENST00000503863 1939 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC6.99□□□□□ -1.29
HMGB1P09429 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.99□□□□□ -1.29
HMGB1P09429 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
HMGB1P09429 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.99□□□□□ -1.29
HMGB1P09429 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 RNU2-6P-201ENST00000411404 190 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC092745.2-202ENST00000411880 369 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 RPL30P3-201ENST00000424262 333 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 UBE2D3P3-201ENST00000426992 425 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGB1P09429 MOB1AP2-201ENST00000446060 614 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 RSU1P1-201ENST00000453416 441 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 PPIAP27-201ENST00000453800 265 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 EIF2S2P5-201ENST00000457635 968 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC093719.1-201ENST00000480427 441 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGB1P09429 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGB1P09429 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGB1P09429 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGB1P09429 AC104108.1-201ENST00000509930 412 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGB1P09429 MIR2117-201ENST00000516780 80 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 RNU6-334P-201ENST00000517072 102 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 AC078899.1-201ENST00000521432 1185 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC008562.1-201ENST00000521763 330 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.99□□□□□ -1.29
HMGB1P09429 AC139103.1-201ENST00000534696 1030 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGB1P09429 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.99□□□□□ -1.29
HMGB1P09429 AC002310.3-201ENST00000569728 723 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGB1P09429 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 NTAN1P1-201ENST00000603150 646 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AL139099.4-201ENST00000614802 114 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AL669942.2-201ENST00000620352 697 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC000123.2-201ENST00000623124 461 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AP006248.2-201ENST00000623309 592 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AL683826.1-201ENST00000624104 627 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC135068.5-201ENST00000624197 983 ntBASIC6.99□□□□□ -1.29
HMGB1P09429 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.99□□□□□ -1.29
HMGB1P09429 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
HMGB1P09429 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
HMGB1P09429 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HMGB1P09429 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
HMGB1P09429 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.98□□□□□ -1.29
HMGB1P09429 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
HMGB1P09429 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.98□□□□□ -1.29
HMGB1P09429 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.98□□□□□ -1.29
HMGB1P09429 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HMGB1P09429 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC6.98□□□□□ -1.29
HMGB1P09429 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
HMGB1P09429 PSG10P-201ENST00000501199 1500 ntBASIC6.98□□□□□ -1.29
HMGB1P09429 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
HMGB1P09429 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.98□□□□□ -1.29
HMGB1P09429 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HMGB1P09429 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms