Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL3A1P02461 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC6.66□□□□□ -1.34
COL3A1P02461 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC6.66□□□□□ -1.34
COL3A1P02461 AC112206.4-201ENST00000515142 405 ntBASIC6.66□□□□□ -1.34
COL3A1P02461 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
COL3A1P02461 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC6.66□□□□□ -1.34
COL3A1P02461 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.66□□□□□ -1.34
COL3A1P02461 MIR4737-201ENST00000583979 81 ntBASIC6.66□□□□□ -1.34
COL3A1P02461 AC104687.2-201ENST00000604442 342 ntBASIC6.66□□□□□ -1.34
COL3A1P02461 AL354696.1-201ENST00000614652 497 ntBASIC6.66□□□□□ -1.34
COL3A1P02461 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC6.66□□□□□ -1.34
COL3A1P02461 AL353662.3-201ENST00000625131 237 ntBASIC6.66□□□□□ -1.34
COL3A1P02461 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.66□□□□□ -1.34
COL3A1P02461 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL3A1P02461 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
COL3A1P02461 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COL3A1P02461 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.65□□□□□ -1.34
COL3A1P02461 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL3A1P02461 ABCC13-202ENST00000463099 3842 ntBASIC6.65□□□□□ -1.34
COL3A1P02461 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL3A1P02461 AC132825.1-201ENST00000463573 2247 ntBASIC6.65□□□□□ -1.34
COL3A1P02461 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL3A1P02461 AL117339.4-201ENST00000608335 7063 ntBASIC6.65□□□□□ -1.34
COL3A1P02461 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COL3A1P02461 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.65□□□□□ -1.34
COL3A1P02461 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COL3A1P02461 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COL3A1P02461 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL3A1P02461 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.65□□□□□ -1.34
COL3A1P02461 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
COL3A1P02461 AC109446.4-201ENST00000623235 2755 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.35
COL3A1P02461 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.35
COL3A1P02461 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.65□□□□□ -1.35
COL3A1P02461 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
COL3A1P02461 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.35
COL3A1P02461 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
COL3A1P02461 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC6.65□□□□□ -1.35
COL3A1P02461 SNORA70.10-201ENST00000384515 134 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 U3.30-201ENST00000391308 210 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 AL136116.2-201ENST00000404020 785 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 OR51B3P-201ENST00000412287 913 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC6.65□□□□□ -1.35
COL3A1P02461 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC6.65□□□□□ -1.35
COL3A1P02461 RBMY2TP-201ENST00000451162 947 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 MTND2P3-201ENST00000452458 470 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 GAPDHP56-201ENST00000506031 988 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC6.65□□□□□ -1.35
COL3A1P02461 UBE2Q2P10-201ENST00000514854 900 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 MTND1P36-201ENST00000522384 936 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC6.65□□□□□ -1.35
COL3A1P02461 BRD9P1-201ENST00000529855 560 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 AC090330.1-201ENST00000588646 764 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 AL031320.1-201ENST00000604177 357 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 MKKS-203ENST00000609375 882 ntTSL 2 BASIC6.65□□□□□ -1.35
COL3A1P02461 AL022401.1-201ENST00000619498 108 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 CR381572.2-201ENST00000624852 397 ntBASIC6.65□□□□□ -1.35
COL3A1P02461 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC6.65□□□□□ -1.35
COL3A1P02461 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC6.65□□□□□ -1.35
COL3A1P02461 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
COL3A1P02461 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC6.64□□□□□ -1.35
COL3A1P02461 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.64□□□□□ -1.35
COL3A1P02461 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL3A1P02461 AL450345.1-202ENST00000605741 3881 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL3A1P02461 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL3A1P02461 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.64□□□□□ -1.35
COL3A1P02461 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL3A1P02461 AL589826.1-201ENST00000340697 249 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 RPL10P10-201ENST00000403509 664 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 ZNF736P10Y-201ENST00000403990 1110 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 RNA5SP113-201ENST00000410486 84 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 RNA5SP345-201ENST00000410646 108 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 AL645608.4-201ENST00000423619 154 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 SETP10-201ENST00000424368 814 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC6.64□□□□□ -1.35
COL3A1P02461 MTCYBP15-201ENST00000433123 1127 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 AL590399.4-201ENST00000436561 601 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.64□□□□□ -1.35
COL3A1P02461 RPL31P44-201ENST00000447680 377 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC6.64□□□□□ -1.35
COL3A1P02461 CBX1P2-201ENST00000453841 458 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.64□□□□□ -1.35
COL3A1P02461 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL3A1P02461 NIFKP7-201ENST00000503365 834 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC6.64□□□□□ -1.35
COL3A1P02461 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC6.64□□□□□ -1.35
COL3A1P02461 AC100784.1-201ENST00000522790 310 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL3A1P02461 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC6.64□□□□□ -1.35
COL3A1P02461 MIR4760-201ENST00000585040 80 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 AC020910.3-201ENST00000603701 874 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 AP001153.1-201ENST00000641024 338 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 AL449283.1-201ENST00000602631 3403 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL3A1P02461 ZNF652P1-201ENST00000442420 1309 ntBASIC6.64□□□□□ -1.35
COL3A1P02461 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6.64□□□□□ -1.35
COL3A1P02461 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL3A1P02461 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL3A1P02461 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms